hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18412959/chunk_1/iprscan-20080501-18412959.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0148
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 207.2    1.5e-57   1
SM00555                                                  90.5    2.1e-22   2
SM00248                                                  34.6    1.4e-05   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00105     1/1      22   147 ..     1   139 []   207.2  1.5e-57
SM00248     1/3     155   184 ..     1    30 []     7.6  4.5e+02
SM00248     2/3     189   218 ..     1    30 []    15.5      7.4
SM00248     3/3     222   251 ..     1    30 []    11.5  1.2e+02
SM00555     1/2     291   321 ..     1    31 []    49.2  5.2e-10
SM00555     2/2     355   385 ..     1    31 []    41.2  1.4e-07

Alignments of top-scoring domains:
SM00105: domain 1 of 1, from 22 to 147: score 207.2, E = 1.5e-57
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                       +++++LRs    +++C+DC   p+P WaSvn+G+flC eC+++HRs
    KIAA0148    22    GAMSKRLRS----SEVCADCSG-PDPSWASVNRGTFLCDECCSVHRS 63   

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L G+HiS+V  R+l++++W+++ L+++e  +++N++ans+we+ l d+++
    KIAA0148    64 L-GRHISQV--RHLKHTPWPPTLLQMVE--TLYNNGANSIWEHSLLDPAS 108  

                   kpkdsda.aasv.KCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                   +++++ ++a++++K   +++++ +fi+aKY++++f v+++++++   
    KIAA0148   109 IMSGR-RkANPQdK---VHPNKAEFIRAKYQMLAF-VHRLPCRD    147  

SM00248: domain 1 of 3, from 155 to 184: score 7.6, E = 4.5e+02
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d    LH  +++gnle++  Ll+ ga  n    
    KIAA0148   155    DLSKQLHSSVRTGNLETCLRLLSLGAQANF    184  

SM00248: domain 2 of 3, from 189 to 218: score 15.5, E = 7.4
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+A + g++  ++lL  +gad+     
    KIAA0148   189    KGNTPLHVASKAGQILQAELLAVYGADPGT    218  

SM00248: domain 3 of 3, from 222 to 251: score 11.5, E = 1.2e+02
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+Tp  +A + g++e+++ L++   ++++   
    KIAA0148   222    SGKTPVDYARQGGHHELAERLVEIQYELTD    251  

SM00555: domain 1 of 2, from 291 to 321: score 49.2, E = 5.2e-10
                   *->aRqKLarLsnaqFeeLltDvndElkRRenea<-*
                      a++KL++Lsn +FeeL +Dv+dE++RRe++a   
    KIAA0148   291    AKKKLQSLSNHLFEELAMDVYDEVDRRETDA    321  

SM00555: domain 2 of 2, from 355 to 385: score 41.2, E = 1.4e-07
                   *->aRqKLarLsnaqFeeLltDvndElkRRenea<-*
                      +RqKLar++  +F +L++D+++++kRR++++   
    KIAA0148   355    GRQKLARFNAHEFATLVIDILSDAKRRQQGS    385  

//