hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18345573/chunk_1/iprscan-20080501-18345573.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0144 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00165 47.5 1.8e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00165 1/1 50 88 .. 1 38 [] 47.5 1.8e-09 Alignments of top-scoring domains: SM00165: domain 1 of 1, from 50 to 88: score 47.5, E = 1.8e-09 *->deekieqLleM.GFsreeavdALratngNverAaeyLls<-* eek++qL++ +G +++e+v AL+ +ng+v+rA+++Ll+ KIAA0144 50 FEEKVKQLIDItGKNQDECVIALHDCNGDVNRAINVLLE 88 //