hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18250453/chunk_1/iprscan-20080501-18250453.nocrc
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Query sequence: KIAA0138
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  84.6    1.2e-20   1
SM00513                                                  52.2    6.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00513    1/1      39    73 ..     1    35 []    52.2  6.8e-11
SM00360    1/1     417   490 ..     1   121 []    84.6  1.2e-20

Alignments of top-scoring domains:
SM00513: domain 1 of 1, from 39 to 73: score 52.2, E = 6.8e-11
                   *->lskLkVseLkdeLkkrGLstsGrKaeLvkRLleal<-*
                      ls L+V +L++eLkkr+L+t+G+K++L++RL++a+   
    KIAA0138    39    LSELRVIDLRAELKKRNLDTGGNKSVLMERLKKAV    73   

SM00360: domain 1 of 1, from 417 to 490: score 84.6, E = 1.2e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +l+V++L  ++++   dL++lF              sk+Gkvv +++
    KIAA0138   417    NLWVSGL--SSTTRATDLKNLF--------------SKYGKVVGAKV 447  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v++                       +   ++++FV++++ ++A k+  i
    KIAA0138   448 VTNAR---------------------SPGARCYGFVTMSTSDEATKC--I 474  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l+    +el  +Gr+   + Ve   
    KIAA0138   475 SHLH---RTEL--HGRM---ISVE    490  

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