hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18250453/chunk_1/iprscan-20080501-18250453.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0138 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or 61.7 1.5e-16 1 PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or 63.7 5.7e-16 1 PF02037.17.fs SAP domain 52.9 1.2e-13 1 PF02037.17.ls SAP domain 54.9 2.5e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02037.17.fs 1/1 39 73 .. 1 35 [] 52.9 1.2e-13 PF02037.17.ls 1/1 39 73 .. 1 35 [] 54.9 2.5e-13 PF00076.12.fs 1/1 418 489 .. 1 74 [] 61.7 1.5e-16 PF00076.12.ls 1/1 418 489 .. 1 74 [] 63.7 5.7e-16 Alignments of top-scoring domains: PF02037.17.fs: domain 1 of 1, from 39 to 73: score 52.9, E = 1.2e-13 *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-* ls L+V +L++eLkkr+L+t+G+K++L+eRL++a+ KIAA0138 39 LSELRVIDLRAELKKRNLDTGGNKSVLMERLKKAV 73 PF02037.17.ls: domain 1 of 1, from 39 to 73: score 54.9, E = 2.5e-13 *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-* ls L+V +L++eLkkr+L+t+G+K++L+eRL++a+ KIAA0138 39 LSELRVIDLRAELKKRNLDTGGNKSVLMERLKKAV 73 PF00076.12.fs: domain 1 of 1, from 418 to 489: score 61.7, E = 1.5e-16 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV l+V++L+ t dLk lFsk+G+++ +k+v++ + ++FV KIAA0138 418 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN--ARSPGARCYGFV 462 eFedeedAekAldalnGkelggrelrv<-* ++ ++++A+k+++ l+ +el gr + v KIAA0138 463 TMSTSDEATKCISHLHRTELHGRMISV 489 PF00076.12.ls: domain 1 of 1, from 418 to 489: score 63.7, E = 5.7e-16 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV l+V++L+ t dLk lFsk+G+++ +k+v++ + ++FV KIAA0138 418 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN--ARSPGARCYGFV 462 eFedeedAekAldalnGkelggrelrv<-* ++ ++++A+k+++ l+ +el gr + v KIAA0138 463 TMSTSDEATKCISHLHRTELHGRMISV 489 //