hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17583346/chunk_1/iprscan-20080501-17583346.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0122
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00360                                                  83.8    2.1e-20   2
SM00443                                                  81.1    1.3e-19   1
SM00547                                                  44.5    1.4e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00360     1/2     211   286 ..     1   121 []    47.1  2.4e-09
SM00547     1/1     296   320 ..     1    25 []    44.5  1.4e-08
SM00360     2/2     382   460 ..     1   121 []    36.7  3.2e-06
SM00443     1/1     936   982 ..     1    48 []    81.1  1.3e-19

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 211 to 286: score 47.1, E = 2.4e-09
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +  + L  p  +te+d+r                +s     ++vr+
    KIAA0122   211    IVMLRML--PQAATEDDIRGQL-------------QSHGVQAREVRL 242  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r+k                      +G+s+GfaFVeF+  +dA +   +
    KIAA0122   243 MRNKS---------------------SGQSRGFAFVEFSHLQDATRW--M 269  

                   ealnaskGkeledgGrptlglrVe<-*
                   ea++  +   +   G++   +      
    KIAA0122   270 EANQ--HSLNI--LGQK---VSMH    286  

SM00547: domain 1 of 1, from 296 to 320: score 44.5, E = 1.4e-08
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      +dW C++C+++Nf++r+kCf+Cg p   
    KIAA0122   296    EDWLCNKCGVQNFKRREKCFKCGVP    320  

SM00360: domain 2 of 2, from 382 to 460: score 36.7, E = 3.2e-06
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvs..v
                      t++ +NL  +p  t + +  +               +++  + s++v
    KIAA0122   382    TIILRNL--NPHSTMDSILGAL--------------APYAVLSSsnV 412  

                   rivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAl
                   r+++dk+                     T  ++GfaF++ ++ e+A+  l
    KIAA0122   413 RVIKDKQ---------------------TQLNRGFAFIQLSTIEAAQ--L 439  

                   liealna.skGkeledgGrptlglrVe<-*
                    ++ l+a +   ++  +G++   ++Ve   
    KIAA0122   440 -LQILQAlHPPLTI--DGKT---INVE    460  

SM00443: domain 1 of 1, from 936 to 982: score 81.1, E = 1.3e-19
                   *->istsniGaklLekMGWkeGkGLGkneqGivePIeakikkkdrkGLGa
                      ++++niG ++L++MGWkeG GLG+++qGiv+PIea+ + ++++GLGa
    KIAA0122   936    LGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR-VRGSGLGA 981  

                   v<-*
                   +   
    KIAA0122   982 R    982  

//