hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17583346/chunk_1/iprscan-20080501-17583346.nocrc
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Query sequence: KIAA0122
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01585.13.fs G-patch domain                                  79.8    2.4e-22   1
PF01585.13.ls G-patch domain                                  81.8      2e-21   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     48.1      1e-12   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     50.2    6.5e-12   2
PF00641.9.fs Zn-finger in Ran binding protein and others     31.8    1.3e-07   1
PF00641.9.ls Zn-finger in Ran binding protein and others     33.8    5.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.ls   1/2     212   285 ..     1    74 []    30.2  6.8e-06
PF00076.12.fs   1/2     212   277 ..     1    68 [.    30.0  1.2e-07
PF00641.9.fs   1/1     293   323 ..     1    32 []    31.8  1.3e-07
PF00641.9.ls   1/1     293   323 ..     1    32 []    33.8  5.7e-07
PF00076.12.ls   2/2     383   459 ..     1    74 []    20.0   0.0019
PF00076.12.fs   2/2     383   459 ..     1    74 []    18.1  0.00026
PF01585.13.fs   1/1     938   982 ..     1    45 []    79.8  2.4e-22
PF01585.13.ls   1/1     938   982 ..     1    45 []    81.8    2e-21

Alignments of top-scoring domains:
PF00076.12.ls: domain 1 of 2, from 212 to 285: score 30.2, E = 6.8e-06
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      +  + Lp+ +te+d++   + +G    +++++r+  ++ g+s+GfaF
    KIAA0122   212    VMLRMLPQAATEDDIRGQLQSHGVQaREVRLMRN--KSSGQSRGFAF 256  

                   VeFedeedAekAldalnG.kelggrelrv<-*
                   VeF    dA++ ++a +++  + g ++     
    KIAA0122   257 VEFSHLQDATRWMEANQHsLNILGQKVSM    285  

PF00076.12.fs: domain 1 of 2, from 212 to 277: score 30.0, E = 1.2e-07
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      +  + Lp+ +te+d++   + +G    +++++r+  ++ g+s+GfaF
    KIAA0122   212    VMLRMLPQAATEDDIRGQLQSHGVQaREVRLMRN--KSSGQSRGFAF 256  

                   VeFedeedAekAldalnGkelg<-*
                   VeF    dA++ ++  n + l+   
    KIAA0122   257 VEFSHLQDATRWME-ANQHSLN    277  

PF00641.9.fs: domain 1 of 1, from 293 to 323: score 31.8, E = 1.3e-07
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      ++ +dW C ++C+vqNf ++ kC+ C+ pk+    
    KIAA0122   293    KINEDWLC-NKCGVQNFKRREKCFKCGVPKSE    323  

PF00641.9.ls: domain 1 of 1, from 293 to 323: score 33.8, E = 5.7e-07
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      ++ +dW C ++C+vqNf ++ kC+ C+ pk+    
    KIAA0122   293    KINEDWLC-NKCGVQNFKRREKCFKCGVPKSE    323  

PF00076.12.ls: domain 2 of 2, from 383 to 459: score 20.0, E = 0.0019
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrDttretgrskGfa
                      +  +NL+p  t + +  + +++   ++ ++++++D  ++t  ++Gfa
    KIAA0122   383    IILRNLNPHSTMDSILGALAPYAVLssSNVRVIKD--KQTQLNRGFA 427  

                   FVeFedeedAe..kAldalnG.kelggrelrv<-*
                   F++  + e+A+    l+al+ + +++g+++ v   
    KIAA0122   428 FIQLSTIEAAQllQILQALHPpLTIDGKTINV    459  

PF00076.12.fs: domain 2 of 2, from 383 to 459: score 18.1, E = 0.00026
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrDttretgrskGfa
                      +  +NL+p  t + +  + +++   ++ ++++++D  ++t  ++Gfa
    KIAA0122   383    IILRNLNPHSTMDSILGALAPYAVLssSNVRVIKD--KQTQLNRGFA 427  

                   FVeFedeedAe..kAldalnG.kelggrelrv<-*
                   F++  + e+A+    l+al+ + +++g+++ v   
    KIAA0122   428 FIQLSTIEAAQllQILQALHPpLTIDGKTINV    459  

PF01585.13.fs: domain 1 of 1, from 938 to 982: score 79.8, E = 2.4e-22
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                      ++niG+++Lq+MGWkeG+GLG+++qGi++Piea+ + +++GLGa+  
    KIAA0122   938    SDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGAR   982  

                   *
                    
    KIAA0122     -   -    

PF01585.13.ls: domain 1 of 1, from 938 to 982: score 81.8, E = 2e-21
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                      ++niG+++Lq+MGWkeG+GLG+++qGi++Piea+ + +++GLGa+  
    KIAA0122   938    SDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGAR   982  

                   *
                    
    KIAA0122     -   -    

//