hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17372466/chunk_1/iprscan-20080501-17372466.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0109 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00928.11.ls Adaptor complexes medium subunit family 446.6 3.1e-131 1 PF00928.11.fs Adaptor complexes medium subunit family 444.7 1.1e-130 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00928.11.fs 1/1 162 438 .] 1 325 [] 444.7 1.1e-130 PF00928.11.ls 1/1 162 438 .] 1 325 [] 446.6 3.1e-131 Alignments of top-scoring domains: PF00928.11.fs: domain 1 of 1, from 162 to 438: score 444.7, E = 1.1e-130 *->vpwrpegikykkNEvflDViErvsvlvdkdGgllnsevqGtidckcf + wr+egiky++NE+flDV+E+v++l++++G++l+++v+G++ +k++ KIAA0109 162 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSY 208 LsGmPeltlgLNdkllikkegsrgysia.es.ngsdGvnlskpkvngsie LsGmPe+++g+Ndk++i+k+g + + ++s+++s i KIAA0109 209 LSGMPECKFGMNDKIVIEKQGKGTADETsKSgKQS-------------IA 245 ldDvsFHpCVrlseFeservIsFiPPDGCeFeLMrYRiiiLwrmaseena +dD++FH+CVrls+F+ser IsFiPPDG eFeLMrYR+ +++ KIAA0109 246 IDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRT-------TKD-- 285 navklPfkvnpqvtenpsvgrievtvklrsdfksdkltaenVvIsiPvPk + lPf+v+p v+e +++++ev+v ++s+fk+ +l a++++++iP P KIAA0109 286 --IILPFRVIPLVRE-VGRTKLEVKVVIKSNFKP-SLLAQKIEVRIPTPL 331 gWikqvsspvlevnsdGdqkakYdpeenaLvWsIkkipggkehtLsnkig + +s +++++ G kakY+ +ena+vW+Ik+++g+ke+++s + KIAA0109 332 N----TSGVQVIC-MKG--KAKYKASENAIVWKIKRMAGMKESQIS---A 371 elelsstsevpekdwlskensfpplyisveFsipgftaSGldpqVrslkv e+el +t +k+w ++pp is++F++p f+ SGl +Vr+lkv KIAA0109 372 EIELLPTND--KKKW-----ARPP--ISMNFEVP-FAPSGL--KVRYLKV 409 sepknycsnykpyKWVRYvTksgtsyqvRi<-* epk+++s++ ++KWVRY+ +sg y+ R+ KIAA0109 410 FEPKLNYSDHDVIKWVRYIGRSG-IYETRC 438 PF00928.11.ls: domain 1 of 1, from 162 to 438: score 446.6, E = 3.1e-131 *->vpwrpegikykkNEvflDViErvsvlvdkdGgllnsevqGtidckcf + wr+egiky++NE+flDV+E+v++l++++G++l+++v+G++ +k++ KIAA0109 162 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSY 208 LsGmPeltlgLNdkllikkegsrgysia.es.ngsdGvnlskpkvngsie LsGmPe+++g+Ndk++i+k+g + + ++s+++s i KIAA0109 209 LSGMPECKFGMNDKIVIEKQGKGTADETsKSgKQS-------------IA 245 ldDvsFHpCVrlseFeservIsFiPPDGCeFeLMrYRiiiLwrmaseena +dD++FH+CVrls+F+ser IsFiPPDG eFeLMrYR+ +++ KIAA0109 246 IDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRT-------TKD-- 285 navklPfkvnpqvtenpsvgrievtvklrsdfksdkltaenVvIsiPvPk + lPf+v+p v+e +++++ev+v ++s+fk+ +l a++++++iP P KIAA0109 286 --IILPFRVIPLVRE-VGRTKLEVKVVIKSNFKP-SLLAQKIEVRIPTPL 331 gWikqvsspvlevnsdGdqkakYdpeenaLvWsIkkipggkehtLsnkig + +s +++++ G kakY+ +ena+vW+Ik+++g+ke+++s + KIAA0109 332 N----TSGVQVIC-MKG--KAKYKASENAIVWKIKRMAGMKESQIS---A 371 elelsstsevpekdwlskensfpplyisveFsipgftaSGldpqVrslkv e+el +t +k+w ++pp is++F++p f+ SGl +Vr+lkv KIAA0109 372 EIELLPTND--KKKW-----ARPP--ISMNFEVP-FAPSGL--KVRYLKV 409 sepknycsnykpyKWVRYvTksgtsyqvRi<-* epk+++s++ ++KWVRY+ +sg y+ R+ KIAA0109 410 FEPKLNYSDHDVIKWVRYIGRSG-IYETRC 438 //