hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17322659/chunk_1/iprscan-20080501-17322659.nocrc
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Query sequence: KIAA0106
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00578.11.ls AhpC/TSA family                                139.6    7.7e-39   1
PF00578.11.fs AhpC/TSA family                                137.7      3e-38   1
PF08534.1.ls Redoxin                                         11.2    0.00056   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08534.1.ls   1/1      20   181 ..     1   179 []    11.2  0.00056
PF00578.11.fs   1/1      21   160 ..     1   124 []   137.7    3e-38
PF00578.11.ls   1/1      21   160 ..     1   124 []   139.6  7.7e-39

Alignments of top-scoring domains:
PF08534.1.ls: domain 1 of 1, from 20 to 181: score 11.2, E = 0.00056
                   *->kvGdkaPagtdfsliPssvdldgkevtlcggPqfdlsdfkGKkvvvl
                        Gd aP   +f++   +++ +  ++           df G  + +l
    KIAA0106    20    LLGDVAP---NFEA---NTTVG--RIRF--------HDFLGDSWGIL 50   

                   ngfpgafcPtCSvkhvPgyeeladkl.akGvdvvavvsvndpfvkmkawa
                   ++ p  f+P+C + ++    +la ++ +++v+ ++  s +  +    aw 
    KIAA0106    51 FSHPRDFTPVC-TTELGRAAKLAPEFaKRNVK-LIALSIDSVED-HLAWS 97   

                   kalg........kldnipvlsDfrgdaaftkalGleidlsalggvqgggi
                   k+ +  + +++++++++p++ D   +++++  lG++ ++ +       g+
    KIAA0106    98 KDINaynceeptEKLPFPIIDD--RNRELAILLGMLDPAEKDEK----GM 141  

                   .raaRyafviDadGkvtylevepgplgkvdvsdaeavLeaaL<-*
                   + +aR +fv+  d k++ + ++p   ++ +++++ +v+   L   
    KIAA0106   142 pVTARVVFVFGPDKKLKLSILYPAT-TGRNFDEILRVV-ISL    181  

PF00578.11.fs: domain 1 of 1, from 21 to 160: score 137.7, E = 3e-38
                   *->vGdkAPdFtlpAvtpndldGqgtvsLsdyrGkekwvVLfFyPkdwcP
                      +Gd AP+F+++     ++   g ++  d+ G ++w +Lf +P+d++P
    KIAA0106    21    LGDVAPNFEAN-----TTV--GRIRFHDFLG-DSWGILFSHPRDFTP 59   

                   vCttElpalaelyeefkalGvevlGvSvDspeshkafaeki.........
                   vCttEl + a+l++ef++++v+++++S+Ds+e+h+a+ ++i+  + ++++
    KIAA0106    60 VCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDInaynceept 109  

                   .plnFPlLsDwpdgevaraYGv...............RttFiIDpdGkvr
                   ++l+FP++ D +++e+a ++G+ ++ ++++++ + + R +F+++pd k++
    KIAA0106   110 eKLPFPIIDD-RNRELAILLGMldpaekdekgmpvtaRVVFVFGPDKKLK 158  

                   yi<-*
                    +   
    KIAA0106   159 LS    160  

PF00578.11.ls: domain 1 of 1, from 21 to 160: score 139.6, E = 7.7e-39
                   *->vGdkAPdFtlpAvtpndldGqgtvsLsdyrGkekwvVLfFyPkdwcP
                      +Gd AP+F+++     ++   g ++  d+ G ++w +Lf +P+d++P
    KIAA0106    21    LGDVAPNFEAN-----TTV--GRIRFHDFLG-DSWGILFSHPRDFTP 59   

                   vCttElpalaelyeefkalGvevlGvSvDspeshkafaeki.........
                   vCttEl + a+l++ef++++v+++++S+Ds+e+h+a+ ++i+  + ++++
    KIAA0106    60 VCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDInaynceept 109  

                   .plnFPlLsDwpdgevaraYGv...............RttFiIDpdGkvr
                   ++l+FP++ D +++e+a ++G+ ++ ++++++ + + R +F+++pd k++
    KIAA0106   110 eKLPFPIIDD-RNRELAILLGMldpaekdekgmpvtaRVVFVFGPDKKLK 158  

                   yi<-*
                    +   
    KIAA0106   159 LS    160  

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