# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00685.fasta.nr -Q ../query/KIAA0104.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0104, 291 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825951 sequences Expectation_n fit: rho(ln(x))= 5.4018+/-0.000188; mu= 9.2857+/- 0.011 mean_var=84.3487+/-16.463, 0's: 28 Z-trim: 39 B-trim: 36 in 1/67 Lambda= 0.139648 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|92090636|sp|P49406.2|RM19_HUMAN RecName: Full=3 ( 292) 1999 411.9 6.8e-113 gi|114578381|ref|XP_515568.2| PREDICTED: mitochond ( 292) 1995 411.1 1.2e-112 gi|75061775|sp|Q5R8M4.1|RM19_PONAB RecName: Full=3 ( 292) 1900 392.0 6.8e-107 gi|109103535|ref|XP_001112069.1| PREDICTED: mitoch ( 292) 1866 385.1 7.9e-105 gi|194220556|ref|XP_001498647.2| PREDICTED: simila ( 292) 1672 346.0 4.6e-93 gi|108860945|sp|Q2HJI0.1|RM19_BOVIN RecName: Full= ( 292) 1669 345.4 7e-93 gi|73980939|ref|XP_532990.2| PREDICTED: similar to ( 292) 1642 340.0 3e-91 gi|19483911|gb|AAH20315.1| Mrpl19 protein [Mus mus ( 291) 1590 329.5 4.3e-88 gi|22001925|sp|Q9D338.1|RM19_MOUSE RecName: Full=3 ( 292) 1590 329.5 4.3e-88 gi|38511663|gb|AAH61064.1| Mitochondrial ribosomal ( 292) 1584 328.3 1e-87 gi|149036472|gb|EDL91090.1| ribosomal protein, mit ( 292) 1582 327.9 1.3e-87 gi|74200682|dbj|BAE24733.1| unnamed protein produc ( 294) 1571 325.7 6.2e-87 gi|149639371|ref|XP_001506001.1| PREDICTED: simila ( 343) 1443 299.9 4e-79 gi|126305590|ref|XP_001365631.1| PREDICTED: hypoth ( 328) 1340 279.2 6.8e-73 gi|194380646|dbj|BAG58476.1| unnamed protein produ ( 194) 1310 272.9 3e-71 gi|118089247|ref|XP_420071.2| PREDICTED: similar t ( 270) 1274 265.8 5.9e-69 gi|197127585|gb|ACH44083.1| putative mitochondrial ( 273) 1194 249.7 4.3e-64 gi|47224654|emb|CAG03638.1| unnamed protein produc ( 278) 1186 248.1 1.3e-63 gi|50417070|gb|AAH78239.1| Mitochondrial ribosomal ( 281) 1169 244.7 1.4e-62 gi|55251116|emb|CAH69005.1| novel protein similar ( 279) 1142 239.2 6.2e-61 gi|148666612|gb|EDK99028.1| mitochondrial ribosoma ( 252) 1120 234.8 1.2e-59 gi|210118454|gb|EEA66185.1| hypothetical protein B ( 218) 817 173.7 2.6e-41 gi|210082136|gb|EEA30893.1| hypothetical protein B ( 218) 811 172.4 6.1e-41 gi|194116168|gb|EDW38211.1| GL12468 [Drosophila pe ( 319) 795 169.4 7.6e-40 gi|198133043|gb|EAL28958.2| GA20783 [Drosophila ps ( 319) 795 169.4 7.6e-40 gi|190627282|gb|EDV42806.1| GF18180 [Drosophila an ( 313) 760 162.3 9.9e-38 gi|190652638|gb|EDV49893.1| GG11838 [Drosophila er ( 306) 759 162.1 1.1e-37 gi|194182935|gb|EDW96546.1| GE25893 [Drosophila ya ( 306) 759 162.1 1.1e-37 gi|115627885|ref|XP_794604.2| PREDICTED: hypotheti ( 327) 756 161.5 1.8e-37 gi|194152772|gb|EDW68206.1| GJ22671 [Drosophila vi ( 301) 753 160.9 2.6e-37 gi|193894046|gb|EDV92912.1| GH18570 [Drosophila gr ( 302) 745 159.3 7.8e-37 gi|194200159|gb|EDX13735.1| GD18561 [Drosophila si ( 306) 745 159.3 7.9e-37 gi|108880086|gb|EAT44311.1| 39S ribosomal protein ( 318) 743 158.9 1.1e-36 gi|194120956|gb|EDW42999.1| GM23749 [Drosophila se ( 306) 741 158.5 1.4e-36 gi|22001930|sp|Q9VHN6.1|RM19_DROME RecName: Full=3 ( 306) 736 157.5 2.8e-36 gi|193916469|gb|EDW15336.1| GI24767 [Drosophila mo ( 470) 733 157.0 5.8e-36 gi|194166062|gb|EDW80963.1| GK11808 [Drosophila wi ( 305) 722 154.6 2e-35 gi|91080579|ref|XP_973524.1| PREDICTED: similar to ( 277) 721 154.4 2.1e-35 gi|55234194|gb|EAA01492.2| AGAP001139-PA [Anophele ( 310) 710 152.2 1.1e-34 gi|156555384|ref|XP_001605318.1| PREDICTED: simila ( 299) 709 152.0 1.2e-34 gi|167875195|gb|EDS38578.1| 39S ribosomal protein ( 311) 686 147.4 3e-33 gi|167866729|gb|EDS30112.1| 39S ribosomal protein ( 311) 685 147.2 3.5e-33 gi|193669304|ref|XP_001943778.1| PREDICTED: simila ( 300) 666 143.3 4.8e-32 gi|66503923|ref|XP_624971.1| PREDICTED: similar to ( 300) 661 142.3 9.7e-32 gi|215508977|gb|EEC18430.1| ribosomal protein L19, ( 228) 654 140.8 2.1e-31 gi|99032317|pdb|2FTC|K Chain K, Structural Model F ( 98) 638 137.3 1e-30 gi|212515661|gb|EEB17766.1| mitochondrial 50S ribo ( 288) 618 133.7 3.8e-29 gi|118126323|ref|XP_424722.2| PREDICTED: similar t ( 138) 608 131.4 8.8e-29 gi|22001922|sp|Q95Y83.1|RM19_CAEEL RecName: Full=P ( 288) 591 128.2 1.7e-27 gi|56758362|gb|AAW27321.1| SJCHGC06253 protein [Sc ( 330) 572 124.4 2.6e-26 >>gi|92090636|sp|P49406.2|RM19_HUMAN RecName: Full=39S r (292 aa) initn: 1999 init1: 1999 opt: 1999 Z-score: 2183.1 bits: 411.9 E(): 6.8e-113 Smith-Waterman score: 1999; 100.000% identity (100.000% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|920 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|920 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|920 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|920 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|920 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS 250 260 270 280 290 >>gi|114578381|ref|XP_515568.2| PREDICTED: mitochondrial (292 aa) initn: 1995 init1: 1995 opt: 1995 Z-score: 2178.7 bits: 411.1 E(): 1.2e-112 Smith-Waterman score: 1995; 99.656% identity (100.000% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|114 KGIRFDLCLTEQQMKDAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS 250 260 270 280 290 >>gi|75061775|sp|Q5R8M4.1|RM19_PONAB RecName: Full=39S r (292 aa) initn: 1900 init1: 1900 opt: 1900 Z-score: 2075.3 bits: 392.0 E(): 6.8e-107 Smith-Waterman score: 1900; 96.220% identity (98.282% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :::::::. ::::::::::::::::: :::::::::::::::::::::::::::::::: gi|750 MAACIAAGYCAAMGLGRSFQAARTLLPKPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT ::.::.:::: ::::::::::: ::::::::::.:::::::::::::::::::::::::: gi|750 VILDKRRPVELERRFLSPEFIPPRGRTDPLKFQMERKDMLERRKVLHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|750 KRLDDSLLYLRDALPEYSTFDVNMKPEVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::.::::::::.::::::::::::::::::::::::::::::: gi|750 KGIRFDLCLTEEQMKEAQKWSQPWLEFDMMREYDTSKIEAAIWKEIEASKRS 250 260 270 280 290 >>gi|109103535|ref|XP_001112069.1| PREDICTED: mitochondr (292 aa) initn: 1866 init1: 1866 opt: 1866 Z-score: 2038.3 bits: 385.1 E(): 7.9e-105 Smith-Waterman score: 1866; 93.471% identity (98.625% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :.:::::: :::::::::::::::.: :::.:::::::::::.::: :::::::::::: gi|109 MASCIAAGHGAAMGLGRSFQAARTLFPAPASFACRVHAGPVRQHSTGTSEPGAFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT ::.::.::.: ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VIMDKRRPAEQERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE :::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::: gi|109 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVHEIEVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::.: gi|109 KRLDDSLLYLRDALPEYSTFDVNMKPVAQEPTQKVPVNELKVKMKPKPWSKRWERPNFDI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::.::.:::::.::::::::::::::::::::::::::::::: gi|109 KGIRFDLCLTEEQMEEAQKWSQPWLEFDMMREYDTSKIEAAIWKEIEASKRS 250 260 270 280 290 >>gi|194220556|ref|XP_001498647.2| PREDICTED: similar to (292 aa) initn: 1694 init1: 1672 opt: 1672 Z-score: 1827.0 bits: 346.0 E(): 4.6e-93 Smith-Waterman score: 1672; 84.192% identity (93.814% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :: ::. :: ::.:::.:: .::: :::.:::...: .:::::::.::::::::::: gi|194 MAASIAGCCGAAAGLARSFRAATALLPAPASFACRARSGSARQQSTGPAEPGAFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT :::: .:: . . ::::::::: ::::.::::::::::::::::.::::::::::::::: gi|194 VIVDTRRPPHQRSRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE ::::::::: :::::::::::: ::::::::::.::::::::::::::::.: ::::::: gi|194 TADPYASGKTSQFLGICIQRSGTGLGATFILRNTIEGQGVEICFELYNPRIQAIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::.:::::..:::..: ::.:::::::::::::::::.::: gi|194 KRLDDSLLYLRDALPEYSTFDMNMKPVAHEPNEEVHVNQLKVKMKPKPWSKRWERPKFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::.::: ::::.::::::::::::::::::::::.::::::.: gi|194 KGIRFDLCLTEEQMKAAQKWSQPWLEFDMMREYDTSKIEAAIWNEIEASKKS 250 260 270 280 290 >>gi|108860945|sp|Q2HJI0.1|RM19_BOVIN RecName: Full=39S (292 aa) initn: 1703 init1: 1669 opt: 1669 Z-score: 1823.8 bits: 345.4 E(): 7e-93 Smith-Waterman score: 1669; 83.849% identity (93.471% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :: :: : :: ::: ::..::.::: .:.: :: ::: :.: :::::::.::::::: gi|108 MAASIARGCQAAKGLGPSFRSARALLPVSTSVASRVLAGPGRRQITGPSEPGVFQPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT :::::. : . : ::::::::: ::::.::::::::::::::::.::::::::::::::: gi|108 VIVDKRGPQRRESRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE ::::::.:: ::::::::::::.::::::::::.::::::::::::::::.::::::::: gi|108 TADPYANGKTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::.:::::.:::...::.:.:::::::::::::::::.::. gi|108 KRLDDSLLYLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNV 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::.::::::::.::::::::::::::::::.:::.:::::: : gi|108 KGIRFDLCLTEEQMKEAQKWSQPWLEFDMMREYDTSKIETAIWNEIEASKSS 250 260 270 280 290 >>gi|73980939|ref|XP_532990.2| PREDICTED: similar to 39S (292 aa) initn: 1676 init1: 1642 opt: 1642 Z-score: 1794.4 bits: 340.0 E(): 3e-91 Smith-Waterman score: 1642; 83.162% identity (93.471% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :: ::.. :: :: :.:.:: .::: ::::: :...:: : :::::::::::.::::: gi|739 MAASIAGACGAAAGLCRGFRAAGALLPAPASIAWRARVGPGRPQSTGPSEPGAFKPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT ::::..: . ::::::::::: ::::.::::::::::::::::.::::::::::::::: gi|739 VIVDRRRAPREERRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE ::: ::.:: :::::::::::: ::::::::::.::::::::::::::::.:::::.::: gi|739 TADLYANGKASQFLGICIQRSGAGLGATFILRNTIEGQGVEICFELYNPRIQEIQVIKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::::::::::::::::::.:::::..::...::::.:::::::::::::::::.::: gi|739 KRLDDSLLYLRDALPEYSTFDMNMKPVAHEPSHEVPVNQLKVKMKPKPWSKRWERPKFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::::::::..:::::::.:::::::::: ::::::::::: ::::::.: gi|739 KGIRFDLCLTEEKMKEAQKWSQPWLEFDMMRTYDTSKIEAAIWDEIEASKKS 250 260 270 280 290 >>gi|19483911|gb|AAH20315.1| Mrpl19 protein [Mus musculu (291 aa) initn: 1616 init1: 1590 opt: 1590 Z-score: 1737.8 bits: 329.5 E(): 4.3e-88 Smith-Waterman score: 1590; 81.443% identity (90.378% similar) in 291 aa overlap (1-291:1-291) 10 20 30 40 50 60 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKPV :: .: . :.. :.:: . :: : :: :::: .:: : :::::::::.:.:::::: gi|194 AASMAESCRASLYLARSVRMARPRLAAFASDACRVCTGPSRFQSTGPSEPGGFKPPPKPV 10 20 30 40 50 60 70 80 90 100 110 120 KIAA01 IVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVTT :::..: : ::::::::::: ::::.::::.:::::::.::::: :::::::::::::: gi|194 IVDRRRVPEDERRFLSPEFIPPRGRTNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTT 70 80 90 100 110 120 130 140 150 160 170 180 KIAA01 ADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEK :::::::: ::::::::.::: :::::: :::.::::::::::::::::.:::::::::: gi|194 ADPYASGKTSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLEK 130 140 150 160 170 180 190 200 210 220 230 240 KIAA01 RLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNIK ::::.::::::::::::::::::::: :: :.::::.:::::::::::::::::::::: gi|194 RLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNIK 190 200 210 220 230 240 250 260 270 280 290 KIAA01 GIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS :::::: :::.:::::::::.::.::::::::::::::::.:.::::::.: gi|194 GIRFDLALTEEQMKEAQKWNKPWIEFDMMREYDTSKIEAALWEEIEASKKS 250 260 270 280 290 >>gi|22001925|sp|Q9D338.1|RM19_MOUSE RecName: Full=39S r (292 aa) initn: 1616 init1: 1590 opt: 1590 Z-score: 1737.7 bits: 329.5 E(): 4.3e-88 Smith-Waterman score: 1590; 81.443% identity (90.378% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :: .: . :.. :.:: . :: : :: :::: .:: : :::::::::.:.::::: gi|220 MAASMAESCRASLYLARSVRMARPRLAAFASDACRVCTGPSRFQSTGPSEPGGFKPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT ::::..: : ::::::::::: ::::.::::.:::::::.::::: ::::::::::::: gi|220 VIVDRRRVPEDERRFLSPEFIPPRGRTNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE ::::::::: ::::::::.::: :::::: :::.::::::::::::::::.::::::::: gi|220 TADPYASGKTSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :::::.::::::::::::::::::::: :: :.::::.::::::::::::::::::::: gi|220 KRLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS ::::::: :::.:::::::::.::.::::::::::::::::.:.::::::.: gi|220 KGIRFDLALTEEQMKEAQKWNKPWIEFDMMREYDTSKIEAALWEEIEASKKS 250 260 270 280 290 >>gi|38511663|gb|AAH61064.1| Mitochondrial ribosomal pro (292 aa) initn: 1610 init1: 1584 opt: 1584 Z-score: 1731.2 bits: 328.3 E(): 1e-87 Smith-Waterman score: 1584; 81.100% identity (90.378% similar) in 291 aa overlap (1-291:2-292) 10 20 30 40 50 KIAA01 AACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP :: .: . :.. :.:: . :: : :: :::: .:: : :::::::::.:.::::: gi|385 MAASMAESCRASLYLARSVRMARPRLAAFASDACRVCTGPSRFQSTGPSEPGGFKPPPKP 10 20 30 40 50 60 60 70 80 90 100 110 KIAA01 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT ::::..: : ::::::::::: ::::.::::.:::::::.::::: ::::::::::::: gi|385 VIVDRRRVPEDERRFLSPEFIPPRGRTNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVT 70 80 90 100 110 120 120 130 140 150 160 170 KIAA01 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE ::::::::: ::::::::.::: :::::: :::.::::::::::::::::.::::::::: gi|385 TADPYASGKTSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLE 130 140 150 160 170 180 180 190 200 210 220 230 KIAA01 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI :.:::.::::::::::::::::::::: :: :.::::.::::::::::::::::::::: gi|385 KQLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA01 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS ::::::: :::.:::::::::.::.::::::::::::::::.:.::::::.: gi|385 KGIRFDLALTEEQMKEAQKWNKPWIEFDMMREYDTSKIEAALWEEIEASKKS 250 260 270 280 290 291 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 21:05:35 2009 done: Tue Mar 3 21:11:01 2009 Total Scan time: 1388.050 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]