hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17273347/chunk_1/iprscan-20080501-17273347.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0103 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00028 25.9 0.0056 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00028 1/3 89 122 .. 1 34 [] 13.5 15 SM00028 2/3 157 190 .. 1 34 [] 11.6 24 SM00028 3/3 194 227 .. 1 34 [] 0.8 4.1e+02 Alignments of top-scoring domains: SM00028: domain 1 of 3, from 89 to 122: score 13.5, E = 15 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++ G+ ++++++yd+Ai+ y++ L+ dP+n KIAA0103 89 HRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTN 122 SM00028: domain 2 of 3, from 157 to 190: score 11.6, E = 24 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ea+ l+++y + dy++A ++e+ + +P+n KIAA0103 157 QEAWHELAELYINEHDYAKAAFCLEELMMTNPHN 190 SM00028: domain 3 of 3, from 194 to 227: score 0.8, E = 4.1e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + + l++++ +y+ +AL+l+ n KIAA0103 194 CQQYAEVKYTQGGLENLELSRKYFAQALKLNNRN 227 //