# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00802.fasta.huge -Q ../query/KIAA0103.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0103, 299 aa
 vs ./tmplib.23147 library

1987206 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.1642+/-0.00455; mu= 8.5118+/- 0.308
 mean_var=89.0251+/-21.244, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.135931

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1140  ( 752 res)   hk01004s1                   ( 752)  143 38.3  0.0014


>>KIAA1140  ( 752 res)   hk01004s1                        (752 aa)
 initn: 151 init1: 117 opt: 143  Z-score: 156.3  bits: 38.3 E(): 0.0014
Smith-Waterman score: 143;  24.615% identity (49.231% similar) in 195 aa overlap (3-188:548-741)

                                           10        20        30  
KIAA01                             GKMAKVSELYDVTWEEMRDKMRKWREENSRNS
                                     : : : .. .:  . .:     :. .:  .
KIAA11 RQVLRLWQTLYSFSQLGGLEKDGSFGEGLTMKKQSGMH-LTLPDAHDADSGSRRASSIAA
       520       530       540       550        560       570      

             40         50         60        70            80      
KIAA01 EQIVEVGEEL-INEYASKLGD-DIWIIYEQVMIAALDYGRDDLAL----FCLQELRRQFP
        .. :.  :: .   . : :  ..:   ::. . : .   ..  :    ::.::    ::
KIAA11 SRLEEAMSELTMPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFP
        580       590       600       610       620       630      

         90       100       110       120       130       140      
KIAA01 GSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIREL
        :: :  . :   :.    ..: ::: . :  .: ..   .    . .  :..  : . :
KIAA11 TSHSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRLGHKSLAQKVL
        640       650       660       670       680       690      

        150       160       170       180          190       200   
KIAA01 NEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLE---ELMMTNPHNHLYCQQYAEVKYT
        . .:.    .:::. :.:.   . .   :. :.    ::  ..:               
KIAA11 RDAVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPFSIIPREL    
        700       710       720       730       740       750      

           210       220       230       240       250       260   
KIAA01 QGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAA




299 residues in 1 query   sequences
1987206 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:52 2008 done: Thu Dec 18 15:07:52 2008
 Total Scan time:  0.330 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]