hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17205752/chunk_1/iprscan-20080501-17205752.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0099 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00806.9.ls Pumilio-family RNA binding repeat 284.3 2.2e-82 8 PF00806.9.fs Pumilio-family RNA binding repeat 268.3 2e-79 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00806.9.fs 1/8 835 869 .. 1 35 [] 33.8 2.7e-09 PF00806.9.ls 1/8 835 869 .. 1 35 [] 35.9 1.3e-07 PF00806.9.ls 2/8 871 905 .. 1 35 [] 27.6 4e-05 PF00806.9.fs 2/8 871 905 .. 1 35 [] 25.6 7.8e-07 PF00806.9.ls 3/8 907 942 .. 1 35 [] 29.2 1.4e-05 PF00806.9.fs 3/8 907 942 .. 1 35 [] 27.2 2.7e-07 PF00806.9.ls 4/8 945 979 .. 1 35 [] 42.3 1.6e-09 PF00806.9.fs 4/8 945 979 .. 1 35 [] 40.3 3.2e-11 PF00806.9.ls 5/8 981 1015 .. 1 35 [] 39.1 1.4e-08 PF00806.9.fs 5/8 981 1015 .. 1 35 [] 37.1 2.8e-10 PF00806.9.ls 6/8 1017 1051 .. 1 35 [] 47.2 5.2e-11 PF00806.9.fs 6/8 1017 1051 .. 1 35 [] 45.2 1.1e-12 PF00806.9.ls 7/8 1053 1088 .. 1 35 [] 30.1 7.3e-06 PF00806.9.fs 7/8 1053 1088 .. 1 35 [] 28.1 1.4e-07 PF00806.9.ls 8/8 1096 1130 .. 1 35 [] 33.0 9.9e-07 PF00806.9.fs 8/8 1096 1130 .. 1 35 [] 31.0 2e-08 Alignments of top-scoring domains: PF00806.9.fs: domain 1 of 8, from 835 to 869: score 33.8, E = 2.7e-09 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i g++ + s+dq+G++++Q le+atp ++ql++ KIAA0099 835 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVF 869 PF00806.9.ls: domain 1 of 8, from 835 to 869: score 35.9, E = 1.3e-07 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i g++ + s+dq+G++++Q le+atp ++ql++ KIAA0099 835 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVF 869 PF00806.9.ls: domain 2 of 8, from 871 to 905: score 27.6, E = 4e-05 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i++ +qL +d +Gnyv+Qk++e+++ eq+ + KIAA0099 871 EILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALA 905 PF00806.9.fs: domain 2 of 8, from 871 to 905: score 25.6, E = 7.8e-07 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +i++ +qL +d +Gnyv+Qk++e+++ eq+ + KIAA0099 871 EILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALA 905 PF00806.9.ls: domain 3 of 8, from 907 to 942: score 29.2, E = 1.4e-05 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* i+g++++L+++ yG++v+Qk le+ ++ +q + + KIAA0099 907 RIRGHVLSLALQMYGCRVIQKALEFIPsDQQVINEM 942 PF00806.9.fs: domain 3 of 8, from 907 to 942: score 27.2, E = 2.7e-07 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* i+g++++L+++ yG++v+Qk le+ ++ +q + + KIAA0099 907 RIRGHVLSLALQMYGCRVIQKALEFIPsDQQVINEM 942 PF00806.9.ls: domain 4 of 8, from 945 to 979: score 42.3, E = 1.6e-09 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +++g+++++++dq+Gn+v+Qk++e+ p+ +q+i+ KIAA0099 945 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 979 PF00806.9.fs: domain 4 of 8, from 945 to 979: score 40.3, E = 3.2e-11 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +++g+++++++dq+Gn+v+Qk++e+ p+ +q+i+ KIAA0099 945 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 979 PF00806.9.ls: domain 5 of 8, from 981 to 1015: score 39.1, E = 1.4e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +kg++ Lst++yG++v+Q++le++ p q+ +il KIAA0099 981 AFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1015 PF00806.9.fs: domain 5 of 8, from 981 to 1015: score 37.1, E = 2.8e-10 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* +kg++ Lst++yG++v+Q++le++ p q+ +il KIAA0099 981 AFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1015 PF00806.9.ls: domain 6 of 8, from 1017 to 1051: score 47.2, E = 5.2e-11 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+ KIAA0099 1017 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1051 PF00806.9.fs: domain 6 of 8, from 1017 to 1051: score 45.2, E = 1.1e-12 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+ KIAA0099 1017 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1051 PF00806.9.ls: domain 7 of 8, from 1053 to 1088: score 30.1, E = 7.3e-06 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* +i+gn+++Ls+++++++v++k+ ++a+++e li KIAA0099 1053 EIRGNVLVLSQHKFASNVVEKCVTHASrTERAVLID 1088 PF00806.9.fs: domain 7 of 8, from 1053 to 1088: score 28.1, E = 1.4e-07 *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-* +i+gn+++Ls+++++++v++k+ ++a+++e li KIAA0099 1053 EIRGNVLVLSQHKFASNVVEKCVTHASrTERAVLID 1088 PF00806.9.ls: domain 8 of 8, from 1096 to 1130: score 33.0, E = 9.9e-07 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* + l+++++dqy+nyv+Qk+++va p q++ ++ KIAA0099 1096 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1130 PF00806.9.fs: domain 8 of 8, from 1096 to 1130: score 31.0, E = 2e-08 *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-* + l+++++dqy+nyv+Qk+++va p q++ ++ KIAA0099 1096 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1130 //