hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17191674/chunk_1/iprscan-20080501-17191674.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0098 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00118.14.ls TCP-1/cpn60 chaperonin family 730.5 1e-216 1 PF00118.14.fs TCP-1/cpn60 chaperonin family 728.5 4.3e-216 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00118.14.fs 1/1 56 550 .. 1 537 [] 728.5 4.3e-216 PF00118.14.ls 1/1 56 550 .. 1 537 [] 730.5 1e-216 Alignments of top-scoring domains: PF00118.14.fs: domain 1 of 1, from 56 to 550: score 728.5, E = 4.3e-216 *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen +a+ ++t+LGP+G++Km+v+ ++Gd+t+TnDGaTIl+ ++++h KIAA0098 56 VANTMRTSLGPNGLDKMMVD-KDGDVTVTNDGATILSMMDVDHQ--- 98 lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir Akl+ve+sk+Qdde+GDGTT vvvLAg+LL+eae+L+++G+hP+ I++ KIAA0098 99 -IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIAD 147 GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia Gye+Aa++a+e+L+k+s +v++++k ++e l+++Akt+l+sKv++ ++ + KIAA0098 148 GYEQAARVAIEHLDKISDSVLVDIK-DTEPLIQTAKTTLGSKVVNSCHRQ 196 dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi +a+++v+av+tv++ ++++ +d++ i+v+ + Gg ++d++li+G+++ KIAA0098 197 --MAEIAVNAVLTVADMERRD--VDFELIKVEGKVGGRLEDTKLIKGVIV 242 tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded +k+++hp +mpk++e+ aKIa+l cp+e ++k++tk +++ ++s+ed KIAA0098 243 DKDFSHP---QMPKKVED-AKIAILTCPFE--PPKPKTK-HKLDVTSVED 285 leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt ++aL++ E++k+++++++i+ + g+n+ i+q+ g+dD+A+h l KIAA0098 286 YKALQKYEKEKFEEMIQQIKET-----GANLAICQW-GFDDEANHLLL-- 327 visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer ++ a+r+v +++ +a+++g+++v+++++++ +e++G+ KIAA0098 328 ----QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT-----AEKLGF- 367 devlekeigdstsddkvtkleerkarLsgkvatIllRGateveldElerr + +++++ +++t+ dk+ ++e++k+ ++++tI++RG+++++++E++r+ KIAA0098 368 AGLVQEISFGTTK-DKMLVIEQCKN---SRAVTIFIRGGNKMIIEEAKRS 413 ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea ++DAl++++++i+d+r+V GGGaaEi +a+a++++ a++++ +eq+a++a KIAA0098 414 LHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE-ADKCPTLEQYAMRA 462 fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki fa+ALeviP++L+eN+G+++i++++++ra+ +k++ ++ +G+d+++++ KIAA0098 463 FADALEVIPMALSENSGMNPIQTMTEVRARQVKEM--NPALGIDCLHKGT 510 vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-* dm+++++i+ l+ k+q ++lAt ++ +iL+iDdi + ++ KIAA0098 511 NDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 550 PF00118.14.ls: domain 1 of 1, from 56 to 550: score 730.5, E = 1e-216 *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen +a+ ++t+LGP+G++Km+v+ ++Gd+t+TnDGaTIl+ ++++h KIAA0098 56 VANTMRTSLGPNGLDKMMVD-KDGDVTVTNDGATILSMMDVDHQ--- 98 lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir Akl+ve+sk+Qdde+GDGTT vvvLAg+LL+eae+L+++G+hP+ I++ KIAA0098 99 -IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIAD 147 GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia Gye+Aa++a+e+L+k+s +v++++k ++e l+++Akt+l+sKv++ ++ + KIAA0098 148 GYEQAARVAIEHLDKISDSVLVDIK-DTEPLIQTAKTTLGSKVVNSCHRQ 196 dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi +a+++v+av+tv++ ++++ +d++ i+v+ + Gg ++d++li+G+++ KIAA0098 197 --MAEIAVNAVLTVADMERRD--VDFELIKVEGKVGGRLEDTKLIKGVIV 242 tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded +k+++hp +mpk++e+ aKIa+l cp+e ++k++tk +++ ++s+ed KIAA0098 243 DKDFSHP---QMPKKVED-AKIAILTCPFE--PPKPKTK-HKLDVTSVED 285 leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt ++aL++ E++k+++++++i+ + g+n+ i+q+ g+dD+A+h l KIAA0098 286 YKALQKYEKEKFEEMIQQIKET-----GANLAICQW-GFDDEANHLLL-- 327 visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer ++ a+r+v +++ +a+++g+++v+++++++ +e++G+ KIAA0098 328 ----QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT-----AEKLGF- 367 devlekeigdstsddkvtkleerkarLsgkvatIllRGateveldElerr + +++++ +++t+ dk+ ++e++k+ ++++tI++RG+++++++E++r+ KIAA0098 368 AGLVQEISFGTTK-DKMLVIEQCKN---SRAVTIFIRGGNKMIIEEAKRS 413 ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea ++DAl++++++i+d+r+V GGGaaEi +a+a++++ a++++ +eq+a++a KIAA0098 414 LHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE-ADKCPTLEQYAMRA 462 fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki fa+ALeviP++L+eN+G+++i++++++ra+ +k++ ++ +G+d+++++ KIAA0098 463 FADALEVIPMALSENSGMNPIQTMTEVRARQVKEM--NPALGIDCLHKGT 510 vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-* dm+++++i+ l+ k+q ++lAt ++ +iL+iDdi + ++ KIAA0098 511 NDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 550 //