hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17135881/chunk_1/iprscan-20080501-17135881.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0095 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04097.4.ls Nucleoporin interacting component 598.6 5.3e-177 1 PF04097.4.fs Nucleoporin interacting component 596.8 1.8e-176 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04097.4.fs 1/1 244 518 .. 1 302 [] 596.8 1.8e-176 PF04097.4.ls 1/1 244 518 .. 1 302 [] 598.6 5.3e-177 Alignments of top-scoring domains: PF04097.4.fs: domain 1 of 1, from 244 to 518: score 596.8, E = 1.8e-176 *->vlvaltkasdaktldsrkslqtrkrkdiniVeqAkkYLEqqFreymn ++v+lt+a+da l++r+s+++r+ ++V+qA++YLEq++++y++ KIAA0095 244 TDVLLTPATDA--LKNRSSVEVRM----EFVRQALAYLEQSYKNYTL 284 klvaknlqqAqlGGvPgtynlVraylnirLerqttvpglpDlesInGvPi ++v++nl+qAqlGGvPgty+lVr++lni+L+ +++pgl+D+ +++G+P+ KIAA0095 285 VTVFGNLHQAQLGGVPGTYQLVRSFLNIKLP--APLPGLQDG-EVEGHPV 331 WAliYYlLRaGdlkeAvqvlneakhqfkkfaqsFptyfqlyasskdgrLp WAliYY++R+Gdl +A+qv+n+a+hq+++f+ t+fq+y++skd+rL+ KIAA0095 332 WALIYYCMRCGDLLAASQVVNRAQHQLGEFK----TWFQEYMNSKDRRLS 377 selenkLrlEYnqriRnAleastDGDPYKrAVYkAiiGRCDvsdtslpev +++enkLrl+Y++++R ++t DPYKrAVY+ iiGRCDv+d++ +ev KIAA0095 378 PATENKLRLHYRRALR----NNT--DPYKRAVYC-IIGRCDVTDNQ-SEV 419 adsiEDwLWlqLsliresdqesdspgErltLeelQkiiledYGesyFnks ad++ED+LWl+L++++++d++++sp++rltL+++Qk++ledYGes+F+ KIAA0095 420 ADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFT-- 467 PAenanqqpylYFqvLlLtGqFEaAIaFLyrfsenrvDAVHfAIaLaelg +nqqp+lYFqvL+Lt+qFEaA+aFL+r++++r++AVH+A++L+el+ KIAA0095 468 ----VNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELK 513 LLrta<-* LL ++ KIAA0095 514 LLLKS 518 PF04097.4.ls: domain 1 of 1, from 244 to 518: score 598.6, E = 5.3e-177 *->vlvaltkasdaktldsrkslqtrkrkdiniVeqAkkYLEqqFreymn ++v+lt+a+da l++r+s+++r+ ++V+qA++YLEq++++y++ KIAA0095 244 TDVLLTPATDA--LKNRSSVEVRM----EFVRQALAYLEQSYKNYTL 284 klvaknlqqAqlGGvPgtynlVraylnirLerqttvpglpDlesInGvPi ++v++nl+qAqlGGvPgty+lVr++lni+L+ +++pgl+D+ +++G+P+ KIAA0095 285 VTVFGNLHQAQLGGVPGTYQLVRSFLNIKLP--APLPGLQDG-EVEGHPV 331 WAliYYlLRaGdlkeAvqvlneakhqfkkfaqsFptyfqlyasskdgrLp WAliYY++R+Gdl +A+qv+n+a+hq+++f+ t+fq+y++skd+rL+ KIAA0095 332 WALIYYCMRCGDLLAASQVVNRAQHQLGEFK----TWFQEYMNSKDRRLS 377 selenkLrlEYnqriRnAleastDGDPYKrAVYkAiiGRCDvsdtslpev +++enkLrl+Y++++R ++t DPYKrAVY+ iiGRCDv+d++ +ev KIAA0095 378 PATENKLRLHYRRALR----NNT--DPYKRAVYC-IIGRCDVTDNQ-SEV 419 adsiEDwLWlqLsliresdqesdspgErltLeelQkiiledYGesyFnks ad++ED+LWl+L++++++d++++sp++rltL+++Qk++ledYGes+F+ KIAA0095 420 ADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFT-- 467 PAenanqqpylYFqvLlLtGqFEaAIaFLyrfsenrvDAVHfAIaLaelg +nqqp+lYFqvL+Lt+qFEaA+aFL+r++++r++AVH+A++L+el+ KIAA0095 468 ----VNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELK 513 LLrta<-* LL ++ KIAA0095 514 LLLKS 518 //