hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17104096/chunk_1/iprscan-20080501-17104096.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0093 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 657.1 5.4e-193 1 SM00456 239.0 3.9e-67 4 SM00239 87.0 2.3e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 47 149 .. 1 92 [] 87.0 2.3e-21 SM00456 1/4 219 251 .. 1 34 [] 60.0 3e-13 SM00456 2/4 376 408 .. 1 34 [] 57.0 2.4e-12 SM00456 3/4 449 481 .. 1 34 [] 57.7 1.5e-12 SM00456 4/4 501 533 .. 1 34 [] 64.3 1.5e-14 SM00119 1/1 590 926 .. 1 407 [] 657.1 5.4e-193 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 47 to 149: score 87.0, E = 2.3e-21 *->tLtvkiisArnLp........DPYVkvs............kTkvvkk +++v++i + +L +++ + +DPYV+v+ ++ ++ ++ +Tk++kk KIAA0093 47 IVRVRVIAGIGLAkkdilgasDPYVRVTlydpmngvltsvQTKTIKK 93 tlsgfNPvWnEesetFeFevpp..s.LeieVyDk......dfiGrvtipp +l NP+WnE ++ F v+p++++L +eV+D+++ +++df+G+v +p KIAA0093 94 SL---NPKWNE---EILFRVHPqqHrLLFEVFDEnrltrdDFLGQVDVP- 136 nnahqhsadglihlsell.ggrh.kl<-* l l++++++ + KIAA0093 137 -------------LYPLPtENPRlER 149 SM00456: domain 1 of 4, from 219 to 251: score 60.0, E = 3e-13 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWeer d Gr+YY+Nhe+++tqW +P++ KIAA0093 219 PLPPGWEERQDIL-GRTYYVNHESRRTQWKRPTP 251 SM00456: domain 2 of 4, from 376 to 408: score 57.0, E = 2.4e-12 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* +lPpgWee d+ Gr YY++h++++t+W+kP+ KIAA0093 376 GLPPGWEEKQDER-GRSYYVDHNSRTTTWTKPTV 408 SM00456: domain 3 of 4, from 449 to 481: score 57.7, E = 1.5e-12 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lP gWe+r p+ Grp++++h+Tk+t+We+Pr+ KIAA0093 449 FLPKGWEVRHAPN-GRPFFIDHNTKTTTWEDPRL 481 SM00456: domain 4 of 4, from 501 to 533: score 64.3, E = 1.5e-14 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWeer++ d Gr++Y+Nh+ k+tqWe+Pr+ KIAA0093 501 PLPPGWEERTHTD-GRIFYINHNIKRTQWEDPRL 533 SM00119: domain 1 of 1, from 590 to 926: score 657.1, E = 5.4e-193 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske + +d Lk+r L Ief +gE glD+GGv rE+ffl+ske KIAA0093 590 VKRADFLKAR----LWIEF------DGEKGLDYGGVAREWFFLISKE 626 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav +fnp +ygLF+ys+ dn y+L++nP +g++ne+hl+ KIAA0093 627 MFNP-YYGLFEYSATDN-------------YTLQINPNSGLCNEDHLS-- 660 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP yF+fiGrv G+A+y+++llD +F rpFyK++L+kp +tlhD+es+D+ KIAA0093 661 YFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKP----ITLHDMESVDS 706 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+y+sL+w+ lend+te ld L F i++e+ KIAA0093 707 EYYNSLRWI-------------------LENDPTE--LD--LRF-IIDEE 732 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG +fg+ +++ELk GGs+i VT++NkkEY++lvi++r++++++kq++AF+eG KIAA0093 733 LFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEG 782 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F+e+ip++l++ +Fde+ELeLL+cGl+ ++dv+d++++T y++gY++n+q KIAA0093 783 FFELIPQDLIK-IFDENELELLMCGLG-DVDVNDWREHTKYKNGYSANHQ 830 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW +v +++ e+r++LLqFVTG+sr+P ++GFa+L++sNGpq KIAA0093 831 VI---QWFWKAVLMMDSEKRIRLLQFVTGTSRVP--MNGFAELYGSNGPQ 875 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg +Ft++++g + LP+AhTCfNrL+LPpY+S e L KL++AI++ KIAA0093 876 SFTVEQWG-----TPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIEN- 919 RiggeGFgls<-* ++GF + KIAA0093 920 ---TQGFDGV 926 //