hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17090372/chunk_1/iprscan-20080501-17090372.nocrc
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Query sequence: KIAA0092
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06657.4.fs Protein of unknown function (DUF1167)         1065.4          0   2
PF06657.4.ls Protein of unknown function (DUF1167)         1055.4          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06657.4.fs   1/2      32   270 ..     1   242 [.   595.5 4.7e-176
PF06657.4.ls   1/1      32   475 .]     1   475 []  1055.4        0
PF06657.4.fs   2/2     271   475 .]   271   475 .]   469.9 2.9e-138

Alignments of top-scoring domains:
PF06657.4.fs: domain 1 of 2, from 32 to 270: score 595.5, E = 4.7e-176
                   *->hsppervvlPSFTQnepfqNchprrspstppkiypspNsqAlvsALK
                      hs++++vv+PS   ++pf+N+++rrsps+p+++yp++Ns+A++sALK
    KIAA0092    32    HSSSPYVVYPS---DKPFLNSDLRRSPSKPTLAYPESNSRAIFSALK 75   

                   tLQeKIrRLELERtQAEdnlnlLSREaaqYKKaLeeetnERnlakqEliK
                   +LQ+KIrRLELER+QAE+++++LSRE+++YKK+L+e+++ER+++k+E++K
    KIAA0092    76 NLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENSKNEESK 125  

                   qkkdisiQLssAqsrCnLLEKQLEYtkrMvlnvErEktmiLEqQaqLqRE
                   +++++++QL++A+++CnLLEKQLEY+++M++++E+E+t++LE+Q++L+RE
    KIAA0092   126 HNQELTSQLLAAENKCNLLEKQLEYMRNMIKHAEMERTSVLEKQVSLERE 175  

                   keqDQmklqakLEKLdvLEkEclrLTttqatAEdKikeLEeKLkEEEhqR
                   +++DQ+++q++LEKLd+LE+E+++LTt+qa+AE+K++eLE+KL+EEE++R
    KIAA0092   176 RQHDQTHVQSQLEKLDLLEQEYNKLTTMQALAEKKMQELEAKLHEEEQER 225  

                   klfQdkAaELQTGLEinrlIfeDkatPcVpNarriKkKKskPPeK<-*
                   k++Q+kAaELQTGLE+nrlIfeDkatPcVpNarriKkKKskPPeK   
    KIAA0092   226 KRMQAKAAELQTGLETNRLIFEDKATPCVPNARRIKKKKSKPPEK    270  

PF06657.4.ls: domain 1 of 1, from 32 to 475: score 1055.4, E = 0
                   *->hsppervvlPSFTQnepfqNchprrspstppkiypspNsqAlvsALK
                      hs++++vv+PS   ++pf+N+++rrsps+p+++yp++Ns+A++sALK
    KIAA0092    32    HSSSPYVVYPS---DKPFLNSDLRRSPSKPTLAYPESNSRAIFSALK 75   

                   tLQeKIrRLELERtQAEdnlnlLSREaaqYKKaLeeetnERnlakqEliK
                   +LQ+KIrRLELER+QAE+++++LSRE+++YKK+L+e+++ER+++k+E++K
    KIAA0092    76 NLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENSKNEESK 125  

                   qkkdisiQLssAqsrCnLLEKQLEYtkrMvlnvErEktmiLEqQaqLqRE
                   +++++++QL++A+++CnLLEKQLEY+++M++++E+E+t++LE+Q++L+RE
    KIAA0092   126 HNQELTSQLLAAENKCNLLEKQLEYMRNMIKHAEMERTSVLEKQVSLERE 175  

                   keqDQmklqakLEKLdvLEkEclrLTttqatAEdKikeLEeKLkEEEhqR
                   +++DQ+++q++LEKLd+LE+E+++LTt+qa+AE+K++eLE+KL+EEE++R
    KIAA0092   176 RQHDQTHVQSQLEKLDLLEQEYNKLTTMQALAEKKMQELEAKLHEEEQER 225  

                   klfQdkAaELQTGLEinrlIfeDkatPcVpNarriKkKKskPPeKKtsRn
                   k++Q+kAaELQTGLE+nrlIfeDkatPcVpNarriKkKKskPPeK t   
    KIAA0092   226 KRMQAKAAELQTGLETNRLIFEDKATPCVPNARRIKKKKSKPPEKST--- 272  

                   clkrqPpyqlcsKlgdlpFvaeKstsPsHavvanvQlvlhlmkqhskalC
                                            sPsHavvanvQlvlhlmkqhskalC
    KIAA0092   273 -------------------------SPSHAVVANVQLVLHLMKQHSKALC 297  

                   ndkpirttslakavpsrsgkskklSvtPPssnGIcdeLSElLmtlqdEld
                   nd++i++++lak+v+sr+gkskklSvtPPssnGI++eLSE+L+tlqdE++
    KIAA0092   298 NDRVINSIPLAKQVSSRGGKSKKLSVTPPSSNGINEELSEVLQTLQDEFG 347  

                   QMsmeHqeLlkqikesethsvkddiEcELEaLvkkMEaKgnQIsKlkKhQ
                   QMs++Hq+L+k+i+es+t+++kd++EcELEaLv++MEaK+nQI+K++K+Q
    KIAA0092   348 QMSFDHQQLAKLIQESPTVELKDKLECELEALVGRMEAKANQITKVRKYQ 397  

                   dsveKlqlkvqnsklketsgildEernpkgsknikgsprKkDclketpgf
                   +++eK++l++q+++lk+t+++ldEern++++++i+g+++KkD++k++pg+
    KIAA0092   398 AQLEKQKLEKQKKELKATKKTLDEERNSSSRSGITGTTNKKDFMKQRPGE 447  

                   qrrknlqplkDvhslQnkLrrddicWeq<-*
                   +rrknlq+lkD++s+Qn+L+++++cW++   
    KIAA0092   448 KRRKNLQLLKDMQSIQNSLQSSSLCWDY    475  

PF06657.4.fs: domain 2 of 2, from 271 to 475: score 469.9, E = 2.9e-138
                   *->stsPsHavvanvQlvlhlmkqhskalCndkpirttslakavpsrsgk
                      stsPsHavvanvQlvlhlmkqhskalCnd++i++++lak+v+sr+gk
    KIAA0092   271    STSPSHAVVANVQLVLHLMKQHSKALCNDRVINSIPLAKQVSSRGGK 317  

                   skklSvtPPssnGIcdeLSElLmtlqdEldQMsmeHqeLlkqikeseths
                   skklSvtPPssnGI++eLSE+L+tlqdE++QMs++Hq+L+k+i+es+t++
    KIAA0092   318 SKKLSVTPPSSNGINEELSEVLQTLQDEFGQMSFDHQQLAKLIQESPTVE 367  

                   vkddiEcELEaLvkkMEaKgnQIsKlkKhQdsveKlqlkvqnsklketsg
                   +kd++EcELEaLv++MEaK+nQI+K++K+Q+++eK++l++q+++lk+t++
    KIAA0092   368 LKDKLECELEALVGRMEAKANQITKVRKYQAQLEKQKLEKQKKELKATKK 417  

                   ildEernpkgsknikgsprKkDclketpgfqrrknlqplkDvhslQnkLr
                   +ldEern++++++i+g+++KkD++k++pg++rrknlq+lkD++s+Qn+L+
    KIAA0092   418 TLDEERNSSSRSGITGTTNKKDFMKQRPGEKRRKNLQLLKDMQSIQNSLQ 467  

                   rddicWeq<-*
                   ++++cW++   
    KIAA0092   468 SSSLCWDY    475  

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