hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17040710/chunk_1/iprscan-20080501-17040710.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0089 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07479.4.ls NAD-dependent glycerol-3-phosphate deh 293.4 4.1e-85 1 PF07479.4.fs NAD-dependent glycerol-3-phosphate deh 291.4 1.6e-84 1 PF01210.13.fs NAD-dependent glycerol-3-phosphate deh 241.7 5.2e-71 1 PF01210.13.ls NAD-dependent glycerol-3-phosphate deh 243.6 3.9e-70 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01210.13.fs 1/1 66 237 .. 1 172 [] 241.7 5.2e-71 PF01210.13.ls 1/1 66 237 .. 1 172 [] 243.6 3.9e-70 PF07479.4.fs 1/1 254 404 .. 1 160 [] 291.4 1.6e-84 PF07479.4.ls 1/1 254 404 .. 1 160 [] 293.4 4.1e-85 Alignments of top-scoring domains: PF01210.13.fs: domain 1 of 1, from 66 to 237: score 241.7, E = 5.2e-71 *->kkiaVlGaGsWGTALAkvLarng.....FeheVrlWgrde.i.geel k++++G+G+WG+A+Ak+ ++n ++ ++F +V +W+++e+++g++l KIAA0089 66 LKVCIVGSGNWGSAVAKIIGNNVkklqkFASTVKMWVFEEtVnGRKL 112 ieeiNttreNvrYLPgikLPenlrattDLeeAlkgAdvivlaVPsqalre ++ iN+++eNv+YLPg+kLPen++a+++L eA+++Ad++v+++P+q+++ KIAA0089 113 TDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHR 162 vlkqlkgllrikpdailvsltKGiev.EpgtlkllSevieEeLpinppqi +++++ g + +++a + l+KGi+++ + +lkl+S++i+E ++i+ i KIAA0089 163 ICDEITGRV--PKKALGITLIKGIDEgPE-GLKLISDIIREKMGID---I 206 aVLSGPshAeEVAkglpTavvvAsreedqqaae<-* VL+G+++A+EVA++++++++++s + +++ KIAA0089 207 SVLMGANIANEVAAEKFCETTIGS--KVMENGL 237 PF01210.13.ls: domain 1 of 1, from 66 to 237: score 243.6, E = 3.9e-70 *->kkiaVlGaGsWGTALAkvLarng.....FeheVrlWgrde.i.geel k++++G+G+WG+A+Ak+ ++n ++ ++F +V +W+++e+++g++l KIAA0089 66 LKVCIVGSGNWGSAVAKIIGNNVkklqkFASTVKMWVFEEtVnGRKL 112 ieeiNttreNvrYLPgikLPenlrattDLeeAlkgAdvivlaVPsqalre ++ iN+++eNv+YLPg+kLPen++a+++L eA+++Ad++v+++P+q+++ KIAA0089 113 TDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHR 162 vlkqlkgllrikpdailvsltKGiev.EpgtlkllSevieEeLpinppqi +++++ g + +++a + l+KGi+++ + +lkl+S++i+E ++i+ i KIAA0089 163 ICDEITGRV--PKKALGITLIKGIDEgPE-GLKLISDIIREKMGID---I 206 aVLSGPshAeEVAkglpTavvvAsreedqqaae<-* VL+G+++A+EVA++++++++++s + +++ KIAA0089 207 SVLMGANIANEVAAEKFCETTIGS--KVMENGL 237 PF07479.4.fs: domain 1 of 1, from 254 to 404: score 291.4, E = 1.6e-84 *->eDvvGvEigGALKNViAIAaGivDGkeylgfGdNaKAalitrGLaEm +D ++vE++GALKN++A++aG++DG l GdN+KAa+i++GL+Em KIAA0089 254 DDADTVELCGALKNIVAVGAGFCDG---LRCGDNTKAAVIRLGLMEM 297 iklgaalGggpeetaTffgLaGlGDLitTCtselsRNrrvGeaLgkgGIl i+++++++ g taTf++++G++DLitTC++ +RNrrv+ea++++G KIAA0089 298 IAFARIFCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTG-- 343 ksleeiekelselnGqvaEGvkTakevyelakrkglvedmPlteaVYril k++ee+eke+ lnGq+++G+ T +evy+++k+kgl++++Pl++aVY+i+ KIAA0089 344 KTIEELEKEM--LNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQIC 391 yeglkpeeaieeL<-* ye +++e + +L KIAA0089 392 YESRPVQEMLSCL 404 PF07479.4.ls: domain 1 of 1, from 254 to 404: score 293.4, E = 4.1e-85 *->eDvvGvEigGALKNViAIAaGivDGkeylgfGdNaKAalitrGLaEm +D ++vE++GALKN++A++aG++DG l GdN+KAa+i++GL+Em KIAA0089 254 DDADTVELCGALKNIVAVGAGFCDG---LRCGDNTKAAVIRLGLMEM 297 iklgaalGggpeetaTffgLaGlGDLitTCtselsRNrrvGeaLgkgGIl i+++++++ g taTf++++G++DLitTC++ +RNrrv+ea++++G KIAA0089 298 IAFARIFCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTG-- 343 ksleeiekelselnGqvaEGvkTakevyelakrkglvedmPlteaVYril k++ee+eke+ lnGq+++G+ T +evy+++k+kgl++++Pl++aVY+i+ KIAA0089 344 KTIEELEKEM--LNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQIC 391 yeglkpeeaieeL<-* ye +++e + +L KIAA0089 392 YESRPVQEMLSCL 404 //