hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17023090/chunk_1/iprscan-20080501-17023090.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0088 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01055.16.ls Glycosyl hydrolases family 31 812.0 3.1e-241 1 PF01055.16.fs Glycosyl hydrolases family 31 810.3 9.7e-241 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01055.16.fs 1/1 364 809 .. 1 593 [] 810.3 9.7e-241 PF01055.16.ls 1/1 364 809 .. 1 593 [] 812.0 3.1e-241 Alignments of top-scoring domains: PF01055.16.fs: domain 1 of 1, from 364 to 809: score 810.3, E = 9.7e-241 *->YffayGGptPkdvvkqYteLTGrPalpPyWalGfhqcRwgYtdksed ++ + Gp++ dv++qY++LTG++alpP+++lG+hq+Rw+Y ++e+ KIAA0088 364 FLLL--GPSISDVFRQYASLTGTQALPPLFSLGYHQSRWNY--RDEA 406 evvrevvdgfreadIPlDviwlDidWhrfdsfdYmdgyrdFTwdperFPd + v+ev++gf+++++P+DviwlDi ++ dg+r+FTwdp rFP+ KIAA0088 407 D-VLEVDQGFDDHNLPCDVIWLDI--------EHADGKRYFTWDPSRFPQ 447 dkpkemldeLhekGiklvviidPgisidkpdngeddeygvydegkenkgk p+ ml++L++k +klv+i+dP+i k d+g y v++e + KIAA0088 448 --PRTMLERLASKRRKLVAIVDPHI---KVDSG----YRVHEELRN---L 485 dyFvKnadGsiyiGavWPDGpsafpDFtnpfdptnparkWWadeiknlyd +++vK+ dGs+y+G++WP G +++pDFtnp r+WWa+++ +++ KIAA0088 486 GLYVKTRDGSDYEGWCWP-GSAGYPDFTNP-T----MRAWWANMFS-YDN 528 elgsglGidGiWiDMNEPsvwgFcGscgpntflpegaryyegFesNGqgt ++gs ++ ++W+DMNEPsv F n KIAA0088 529 YEGS-APNLFVWNDMNEPSV--F------N-------------------- 549 naepasdsawrvegtsnstldPdptkpenlyPYaInnqgrgdlg.ekTmp g+e Tm KIAA0088 550 -------------------------------------------GpEVTML 556 tdavHygggrktevrdhyfydggdpeevHNlYGllmakAtyeglrkrssr +da+Hygg + +h+ +vHN+YGl+ ++At++glr+rs + KIAA0088 557 KDAQHYGG-----W-EHR--------DVHNIYGLYVHMATADGLRQRS-G 591 plKnkRpFilSRSgfaGsQRYaaahWtGDNtssWehLrySipmgLsfgls + +RpF+l+R++faGsQR++ a+WtGDNt++W+hL++Sipm+Ls+gl KIAA0088 592 G--MERPFVLARAFFAGSQRFG-AVWTGDNTAEWDHLKISIPMCLSLGLV 638 GiPfvGaDiGGFfGgnkdnenfhlgpteaELcvRWmQlGAFyPffRnHss G++f+GaD+GGFf n p++ EL+vRW+Q+GA++PffR H++ KIAA0088 639 GLSFCGADVGGFFK-N---------PEP-ELLVRWYQMGAYQPFFRAHAH 677 ngtkrvqEPWlfgeeaevaeaarkalrlRYrLLPYlYtlfyeAhetGlPv ++t r +EPWl ++ +++r+al RY+LLP++Ytl y+Ah++G+Pv KIAA0088 678 LDTGR-REPWLLPSQ--HNDIIRDALGQRYSLLPFWYTLLYQAHREGIPV 724 mRPLflefPdDentydiddQfllGddLLVAPVleegatsrdvYLPreGvg mRPL+ ++P+D +t++iddQ+llGd+LLV PV + ga+ ++vYLP g KIAA0088 725 MRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLP----G 770 .eGgtWyDffdwtgevyeggteggggqtvtvdAPLdtiPvfvRgGsIi<- +++ +WyD ++++++g +qt+ +++ L++iPvf+RgG+I+ KIAA0088 771 qGE-VWYDI--QSYQKHHG------PQTLYLPVTLSSIPVFQRGGTIV 809 * KIAA0088 - - PF01055.16.ls: domain 1 of 1, from 364 to 809: score 812.0, E = 3.1e-241 *->YffayGGptPkdvvkqYteLTGrPalpPyWalGfhqcRwgYtdksed ++ + Gp++ dv++qY++LTG++alpP+++lG+hq+Rw+Y ++e+ KIAA0088 364 FLLL--GPSISDVFRQYASLTGTQALPPLFSLGYHQSRWNY--RDEA 406 evvrevvdgfreadIPlDviwlDidWhrfdsfdYmdgyrdFTwdperFPd + v+ev++gf+++++P+DviwlDi ++ dg+r+FTwdp rFP+ KIAA0088 407 D-VLEVDQGFDDHNLPCDVIWLDI--------EHADGKRYFTWDPSRFPQ 447 dkpkemldeLhekGiklvviidPgisidkpdngeddeygvydegkenkgk p+ ml++L++k +klv+i+dP+i k d+g y v++e + KIAA0088 448 --PRTMLERLASKRRKLVAIVDPHI---KVDSG----YRVHEELRN---L 485 dyFvKnadGsiyiGavWPDGpsafpDFtnpfdptnparkWWadeiknlyd +++vK+ dGs+y+G++WP G +++pDFtnp r+WWa+++ +++ KIAA0088 486 GLYVKTRDGSDYEGWCWP-GSAGYPDFTNP-T----MRAWWANMFS-YDN 528 elgsglGidGiWiDMNEPsvwgFcGscgpntflpegaryyegFesNGqgt ++gs ++ ++W+DMNEPsv F n KIAA0088 529 YEGS-APNLFVWNDMNEPSV--F------N-------------------- 549 naepasdsawrvegtsnstldPdptkpenlyPYaInnqgrgdlg.ekTmp g+e Tm KIAA0088 550 -------------------------------------------GpEVTML 556 tdavHygggrktevrdhyfydggdpeevHNlYGllmakAtyeglrkrssr +da+Hygg + +h+ +vHN+YGl+ ++At++glr+rs + KIAA0088 557 KDAQHYGG-----W-EHR--------DVHNIYGLYVHMATADGLRQRS-G 591 plKnkRpFilSRSgfaGsQRYaaahWtGDNtssWehLrySipmgLsfgls + +RpF+l+R++faGsQR++ a+WtGDNt++W+hL++Sipm+Ls+gl KIAA0088 592 G--MERPFVLARAFFAGSQRFG-AVWTGDNTAEWDHLKISIPMCLSLGLV 638 GiPfvGaDiGGFfGgnkdnenfhlgpteaELcvRWmQlGAFyPffRnHss G++f+GaD+GGFf n p++ EL+vRW+Q+GA++PffR H++ KIAA0088 639 GLSFCGADVGGFFK-N---------PEP-ELLVRWYQMGAYQPFFRAHAH 677 ngtkrvqEPWlfgeeaevaeaarkalrlRYrLLPYlYtlfyeAhetGlPv ++t r +EPWl ++ +++r+al RY+LLP++Ytl y+Ah++G+Pv KIAA0088 678 LDTGR-REPWLLPSQ--HNDIIRDALGQRYSLLPFWYTLLYQAHREGIPV 724 mRPLflefPdDentydiddQfllGddLLVAPVleegatsrdvYLPreGvg mRPL+ ++P+D +t++iddQ+llGd+LLV PV + ga+ ++vYLP g KIAA0088 725 MRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLP----G 770 .eGgtWyDffdwtgevyeggteggggqtvtvdAPLdtiPvfvRgGsIi<- +++ +WyD ++++++g +qt+ +++ L++iPvf+RgG+I+ KIAA0088 771 qGE-VWYDI--QSYQKHHG------PQTLYLPVTLSSIPVFQRGGTIV 809 * KIAA0088 - 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