# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha01002.fasta.nr -Q ../query/KIAA0087.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0087, 165 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827062 sequences Expectation_n fit: rho(ln(x))= 4.8249+/-0.000182; mu= 9.0434+/- 0.010 mean_var=67.5857+/-13.038, 0's: 43 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.156008 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|37674427|gb|AAQ96877.1| unknown [Homo sapiens] ( 138) 964 224.9 3.6e-57 >>gi|37674427|gb|AAQ96877.1| unknown [Homo sapiens] (138 aa) initn: 964 init1: 964 opt: 964 Z-score: 1182.7 bits: 224.9 E(): 3.6e-57 Smith-Waterman score: 964; 99.275% identity (100.000% similar) in 138 aa overlap (28-165:1-138) 10 20 30 40 50 60 KIAA00 IFDHDYAKKAPASSSVSQRPSGGTPGRMEAWESSQPLLRCEIPCPLPGTDRDGSVSLPGE ::::::::::::::::::::::::::::::::: gi|376 MEAWESSQPLLRCEIPCPLPGTDRDGSVSLPGE 10 20 30 70 80 90 100 110 120 KIAA00 AASCDLDTLEPEHGNRRVSGNPISVCWAYKVTKVKCWSVRERGGRHIGGPRSTLKHPAHH :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|376 AASCDLDTLEPEHGNRRVSGNPISVCWAYKVTKVKCWSVRERGGRHIGGPRNTLKHPAHH 40 50 60 70 80 90 130 140 150 160 KIAA00 GMGKNLATSLPTAASLGLGKGQLLVSIRFMDTTKKRGQSETFNIC ::::::::::::::::::::::::::::::::::::::::::::: gi|376 GMGKNLATSLPTAASLGLGKGQLLVSIRFMDTTKKRGQSETFNIC 100 110 120 130 165 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 19:47:56 2009 done: Tue Mar 3 19:54:04 2009 Total Scan time: 1143.480 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]