hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16591244/chunk_1/iprscan-20080501-16591244.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0086 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07522.4.ls DNA repair metallo-beta-lactamase 174.2 2.9e-49 1 PF07522.4.fs DNA repair metallo-beta-lactamase 172.5 9.9e-49 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07522.4.fs 1/1 923 1021 .. 1 135 [] 172.5 9.9e-49 PF07522.4.ls 1/1 923 1021 .. 1 135 [] 174.2 2.9e-49 Alignments of top-scoring domains: PF07522.4.fs: domain 1 of 1, from 923 to 1021: score 172.5, E = 9.9e-49 *->vlTtdesesriHavpmnsleesfkiikasfnsLlelltsyekeydpv ++Ttd+++s +H++pm+++ +f+ L+++l+++ +y+++ KIAA0086 923 LITTDMCSSLVHLLPMMQI---------NFKGLQSHLKKCGGKYNQI 960 igirPTGWtkskkpkkgkdrskvkSpissikkkvledlkaeRdvdtseav +++rPTGWt+s+k+++++d ++++ KIAA0086 961 LAFRPTGWTHSNKFTRIADVIPQT-------------------------- 984 KldkisiysVPYSEHSSfsELkeFvqflkPkrvIPtVn<-* K ++isiy++PYSEHSS+ E+k+Fvq+lkP+++IPtVn KIAA0086 985 K-GNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVN 1021 PF07522.4.ls: domain 1 of 1, from 923 to 1021: score 174.2, E = 2.9e-49 *->vlTtdesesriHavpmnsleesfkiikasfnsLlelltsyekeydpv ++Ttd+++s +H++pm+++ +f+ L+++l+++ +y+++ KIAA0086 923 LITTDMCSSLVHLLPMMQI---------NFKGLQSHLKKCGGKYNQI 960 igirPTGWtkskkpkkgkdrskvkSpissikkkvledlkaeRdvdtseav +++rPTGWt+s+k+++++d ++++ KIAA0086 961 LAFRPTGWTHSNKFTRIADVIPQT-------------------------- 984 KldkisiysVPYSEHSSfsELkeFvqflkPkrvIPtVn<-* K ++isiy++PYSEHSS+ E+k+Fvq+lkP+++IPtVn KIAA0086 985 K-GNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVN 1021 //