hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16541874/chunk_1/iprscan-20080501-16541874.nocrc
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Query sequence: KIAA0083
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08696.1.ls DNA replication factor Dna2                    428.8   6.9e-126   1
PF08696.1.fs DNA replication factor Dna2                    426.9   2.6e-125   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08696.1.fs   1/1      78   300 ..     1   234 []   426.9 2.6e-125
PF08696.1.ls   1/1      78   300 ..     1   234 []   428.8 6.9e-126

Alignments of top-scoring domains:
PF08696.1.fs: domain 1 of 1, from 78 to 300: score 426.9, E = 2.6e-125
                   *->kspkqlllvcsdskgetetviLRdeWfdtpvepGDiIHlvieGdfdg
                      +++k+l++++s+s +++e++iLR++W+++pvepGDiIH  +eGd+++
    KIAA0083    78    NCEKRLVITASQSLENKELCILRNDWCSVPVEPGDIIH--LEGDCTS 122  

                   dgrcivDdkDPkTglkddnlLIlhPDiLiSaTsVAsSigCpRRaVLqerf
                   d ++i+D+        d+++LIl+PD+LiS+Ts+AsSi+C+RRaVL+e f
    KIAA0083   123 D-TWIIDK--------DFGYLILYPDMLISGTSIASSIRCMRRAVLSETF 163  

                   kspRgesskpmllGtIlHEiFQealkyKLtankfdleflqelleevlkkp
                   +s+ ++ +++ml+Gt lHE+FQ+a+     +n+f++e+lqel+ +++++ 
    KIAA0083   164 RSS-DPATRQMLIGTVLHEVFQKAI-----NNSFAPEKLQELAFQTIQEI 207  

                   kyleelyalgesqdevreelmqeylPsiesWakdYvkk.......kssss
                   ++l+e+y+l++sqde+++e+ ++ylPs+++Wa d+++k+++++ +++++s
    KIAA0083   208 RHLKEMYRLNLSQDEIKQEV-EDYLPSFCKWAGDFMHKntstdfpQMQLS 256  

                   nsipesrtsqketlsIskvlDIEEnIWSPryGLKGkIDATVevk<-*
                    ++++s+++++++++++k +DIEE+IWSPr+GLKGkID+TV vk   
    KIAA0083   257 LPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKGKIDVTVGVK    300  

PF08696.1.ls: domain 1 of 1, from 78 to 300: score 428.8, E = 6.9e-126
                   *->kspkqlllvcsdskgetetviLRdeWfdtpvepGDiIHlvieGdfdg
                      +++k+l++++s+s +++e++iLR++W+++pvepGDiIH  +eGd+++
    KIAA0083    78    NCEKRLVITASQSLENKELCILRNDWCSVPVEPGDIIH--LEGDCTS 122  

                   dgrcivDdkDPkTglkddnlLIlhPDiLiSaTsVAsSigCpRRaVLqerf
                   d ++i+D+        d+++LIl+PD+LiS+Ts+AsSi+C+RRaVL+e f
    KIAA0083   123 D-TWIIDK--------DFGYLILYPDMLISGTSIASSIRCMRRAVLSETF 163  

                   kspRgesskpmllGtIlHEiFQealkyKLtankfdleflqelleevlkkp
                   +s+ ++ +++ml+Gt lHE+FQ+a+     +n+f++e+lqel+ +++++ 
    KIAA0083   164 RSS-DPATRQMLIGTVLHEVFQKAI-----NNSFAPEKLQELAFQTIQEI 207  

                   kyleelyalgesqdevreelmqeylPsiesWakdYvkk.......kssss
                   ++l+e+y+l++sqde+++e+ ++ylPs+++Wa d+++k+++++ +++++s
    KIAA0083   208 RHLKEMYRLNLSQDEIKQEV-EDYLPSFCKWAGDFMHKntstdfpQMQLS 256  

                   nsipesrtsqketlsIskvlDIEEnIWSPryGLKGkIDATVevk<-*
                    ++++s+++++++++++k +DIEE+IWSPr+GLKGkID+TV vk   
    KIAA0083   257 LPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKGKIDVTVGVK    300  

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