# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha01209.fasta.nr -Q ../query/KIAA0075.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0075, 174 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826984 sequences Expectation_n fit: rho(ln(x))= 5.5965+/-0.000183; mu= 4.8270+/- 0.010 mean_var=69.2886+/-13.354, 0's: 37 Z-trim: 40 B-trim: 0 in 0/66 Lambda= 0.154079 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119575826|gb|EAW55422.1| E2F transcription fact ( 214) 1148 263.5 1.4e-68 gi|90112107|gb|AAI14555.1| E2F3 protein [Homo sapi ( 224) 1148 263.5 1.5e-68 gi|51476300|emb|CAH18140.1| hypothetical protein [ ( 334) 1148 263.5 2.1e-68 gi|119575825|gb|EAW55421.1| E2F transcription fact ( 335) 1148 263.5 2.1e-68 gi|2811006|sp|O00716.1|E2F3_HUMAN RecName: Full=Tr ( 465) 1148 263.6 2.8e-68 gi|109069810|ref|XP_001103396.1| PREDICTED: simila ( 425) 1142 262.3 6.5e-68 gi|738758|prf||2001415A E2F-3 protein ( 465) 1133 260.3 2.8e-67 gi|194223054|ref|XP_001915576.1| PREDICTED: simila ( 469) 1129 259.4 5.3e-67 gi|194038077|ref|XP_001926236.1| PREDICTED: simila ( 405) 1128 259.1 5.4e-67 gi|76663083|ref|XP_614932.2| PREDICTED: similar to ( 463) 1128 259.2 6.1e-67 gi|74004128|ref|XP_545361.2| PREDICTED: similar to ( 509) 1120 257.4 2.3e-66 gi|74139090|dbj|BAE38442.1| unnamed protein produc ( 334) 1116 256.4 2.9e-66 gi|18848240|gb|AAH24125.1| E2f3 protein [Mus muscu ( 335) 1116 256.4 2.9e-66 gi|37590269|gb|AAH59262.1| E2f3 protein [Mus muscu ( 388) 1116 256.5 3.3e-66 gi|73920204|sp|O35261.2|E2F3_MOUSE RecName: Full=T ( 457) 1116 256.5 3.8e-66 gi|2454576|gb|AAB71671.1| transcriptional activato ( 356) 1112 255.6 5.7e-66 gi|126321954|ref|XP_001366911.1| PREDICTED: simila ( 457) 1074 247.2 2.5e-63 gi|118086362|ref|XP_418915.2| PREDICTED: similar t ( 455) 949 219.4 5.7e-55 gi|54038500|gb|AAH84507.1| E2F transcription facto ( 427) 876 203.1 4.1e-50 gi|7264224|gb|AAF44124.1| transcription factor E2F ( 429) 849 197.1 2.7e-48 gi|66910671|gb|AAH97504.1| LOC398159 protein [Xeno ( 429) 848 196.9 3.1e-48 gi|149045296|gb|EDL98382.1| similar to E2f3 protei ( 105) 676 158.4 3e-37 gi|47195588|emb|CAF87984.1| unnamed protein produc ( 209) 419 101.4 8.5e-20 gi|47220780|emb|CAF99987.1| unnamed protein produc ( 410) 414 100.4 3.3e-19 gi|115955252|ref|XP_001190160.1| PREDICTED: simila ( 404) 413 100.2 3.8e-19 gi|167859066|gb|ACA04468.1| E2E3 [Strongylocentrot ( 404) 413 100.2 3.8e-19 gi|76611569|ref|XP_874289.1| PREDICTED: similar to ( 367) 391 95.3 1e-17 gi|149471733|ref|XP_001515449.1| PREDICTED: hypoth ( 468) 391 95.3 1.3e-17 gi|149694260|ref|XP_001504272.1| PREDICTED: simila ( 438) 379 92.7 7.6e-17 gi|54695916|gb|AAV38330.1| E2F transcription facto ( 437) 373 91.3 1.9e-16 gi|119615464|gb|EAW95058.1| E2F transcription fact ( 241) 368 90.1 2.5e-16 gi|31657162|gb|AAH53676.1| E2F transcription facto ( 437) 368 90.2 4.1e-16 gi|2494228|sp|Q14209.1|E2F2_HUMAN RecName: Full=Tr ( 437) 368 90.2 4.1e-16 gi|61366377|gb|AAX42851.1| E2F transcription facto ( 438) 368 90.2 4.2e-16 gi|114554629|ref|XP_524538.2| PREDICTED: E2F trans ( 437) 367 90.0 4.8e-16 gi|108999097|ref|XP_001102839.1| PREDICTED: E2F tr ( 437) 367 90.0 4.8e-16 gi|74186048|dbj|BAE34148.1| unnamed protein produc ( 224) 355 87.2 1.7e-15 gi|74178817|dbj|BAE34048.1| unnamed protein produc ( 248) 355 87.2 1.9e-15 gi|73920203|sp|P56931.2|E2F2_MOUSE RecName: Full=T ( 443) 354 87.1 3.6e-15 gi|148697999|gb|EDL29946.1| E2F transcription fact ( 564) 354 87.2 4.5e-15 gi|220673319|emb|CAX13650.1| novel protein similar ( 429) 347 85.5 1e-14 gi|119615463|gb|EAW95057.1| E2F transcription fact ( 350) 335 82.8 5.5e-14 gi|70569326|dbj|BAE06391.1| transcription factor p ( 441) 332 82.2 1.1e-13 gi|126328552|ref|XP_001362165.1| PREDICTED: simila ( 490) 324 80.5 4e-13 gi|149030929|gb|EDL85956.1| E2F transcription fact ( 432) 313 78.0 2e-12 gi|47230024|emb|CAG10438.1| unnamed protein produc ( 444) 302 75.5 1.1e-11 gi|12857301|dbj|BAB30968.1| unnamed protein produc ( 385) 300 75.1 1.3e-11 gi|2494227|sp|Q61501.1|E2F1_MOUSE RecName: Full=Tr ( 430) 300 75.1 1.5e-11 gi|148698000|gb|EDL29947.1| E2F transcription fact ( 382) 299 74.8 1.5e-11 gi|126291710|ref|XP_001381329.1| PREDICTED: simila ( 436) 295 74.0 3.2e-11 >>gi|119575826|gb|EAW55422.1| E2F transcription factor 3 (214 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1387.3 bits: 263.5 E(): 1.4e-68 Smith-Waterman score: 1148; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:41-214) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|119 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 20 30 40 50 60 70 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 80 90 100 110 120 130 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 140 150 160 170 180 190 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|119 EGISDLFDAYDLEKLPLVEDFMCS 200 210 >>gi|90112107|gb|AAI14555.1| E2F3 protein [Homo sapiens] (224 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1387.0 bits: 263.5 E(): 1.5e-68 Smith-Waterman score: 1148; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:51-224) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|901 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 30 40 50 60 70 80 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 90 100 110 120 130 140 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 150 160 170 180 190 200 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|901 EGISDLFDAYDLEKLPLVEDFMCS 210 220 >>gi|51476300|emb|CAH18140.1| hypothetical protein [Homo (334 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1384.3 bits: 263.5 E(): 2.1e-68 Smith-Waterman score: 1148; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:161-334) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|514 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 140 150 160 170 180 190 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 200 210 220 230 240 250 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 260 270 280 290 300 310 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|514 EGISDLFDAYDLEKLPLVEDFMCS 320 330 >>gi|119575825|gb|EAW55421.1| E2F transcription factor 3 (335 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1384.3 bits: 263.5 E(): 2.1e-68 Smith-Waterman score: 1148; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:162-335) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|119 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 140 150 160 170 180 190 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 200 210 220 230 240 250 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 260 270 280 290 300 310 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|119 EGISDLFDAYDLEKLPLVEDFMCS 320 330 >>gi|2811006|sp|O00716.1|E2F3_HUMAN RecName: Full=Transc (465 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1382.1 bits: 263.6 E(): 2.8e-68 Smith-Waterman score: 1148; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:292-465) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|281 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 270 280 290 300 310 320 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 330 340 350 360 370 380 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 390 400 410 420 430 440 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|281 EGISDLFDAYDLEKLPLVEDFMCS 450 460 >>gi|109069810|ref|XP_001103396.1| PREDICTED: similar to (425 aa) initn: 1142 init1: 1142 opt: 1142 Z-score: 1375.5 bits: 262.3 E(): 6.5e-68 Smith-Waterman score: 1142; 98.851% identity (100.000% similar) in 174 aa overlap (1-174:252-425) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|109 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 230 240 250 260 270 280 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|109 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPTSKDLA 290 300 310 320 330 340 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 STNSGHSDCSISMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 350 360 370 380 390 400 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|109 EGISDLFDAYDLEKLPLVEDFMCS 410 420 >>gi|738758|prf||2001415A E2F-3 protein (465 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1364.0 bits: 260.3 E(): 2.8e-67 Smith-Waterman score: 1133; 97.701% identity (99.425% similar) in 174 aa overlap (1-174:292-465) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|738 EVTELSQEEKKLDELIQSCTLDLKIITEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 270 280 290 300 310 320 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|738 PETRLEVPDSIESLQIHLASIQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA 330 340 350 360 370 380 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE ::::::::::::::::::.:::::::::::::::::::::::::.:::::::::::.::: gi|738 STNSGHSDCSVSMGNLSPIASPANLLQQTEDQIPSNLEGPFVNLIPPLLQEDYLLSIGEE 390 400 410 420 430 440 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|738 EGISDLFDAYDLEKLPLVEDFMCS 450 460 >>gi|194223054|ref|XP_001915576.1| PREDICTED: similar to (469 aa) initn: 1129 init1: 1129 opt: 1129 Z-score: 1359.2 bits: 259.4 E(): 5.3e-67 Smith-Waterman score: 1129; 97.701% identity (99.425% similar) in 174 aa overlap (1-174:296-469) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|194 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 270 280 290 300 310 320 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA ::::::::: ::::::::::::::::::::::::::::::::::::::::::::.::::: gi|194 PETRLEVPDPIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPSSKDLA 330 340 350 360 370 380 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE ::::::::::.::.:::::::::::::::::::::::::::::::::::::::::::::: gi|194 STNSGHSDCSISMANLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 390 400 410 420 430 440 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|194 EGISDLFDAYDLEKLPLVEDFMCS 450 460 >>gi|194038077|ref|XP_001926236.1| PREDICTED: similar to (405 aa) initn: 1128 init1: 1128 opt: 1128 Z-score: 1359.0 bits: 259.1 E(): 5.4e-67 Smith-Waterman score: 1128; 97.701% identity (99.425% similar) in 174 aa overlap (1-174:232-405) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|194 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 210 220 230 240 250 260 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA ::::::::: ::::::::::::::::::::::::::::::::::::::::::::.::::: gi|194 PETRLEVPDPIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPTSKDLA 270 280 290 300 310 320 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE ::::::::::.::.:::::::::::::::::::::::::::::::::::::::::::::: gi|194 STNSGHSDCSISMANLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 330 340 350 360 370 380 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|194 EGISDLFDAYDLEKLPLVEDFMCS 390 400 >>gi|76663083|ref|XP_614932.2| PREDICTED: similar to Tra (463 aa) initn: 1128 init1: 1128 opt: 1128 Z-score: 1358.1 bits: 259.2 E(): 6.1e-67 Smith-Waterman score: 1128; 97.701% identity (99.425% similar) in 174 aa overlap (1-174:290-463) 10 20 30 KIAA00 ENQRLAYVTYQDIRKISGLKDQTVIVVKAP :::::::::::::::::::::::::::::: gi|766 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP 260 270 280 290 300 310 40 50 60 70 80 90 KIAA00 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA ::::::::: ::::::::::::::::::::::::::::::::::::::::::::.::::: gi|766 PETRLEVPDPIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPTSKDLA 320 330 340 350 360 370 100 110 120 130 140 150 KIAA00 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE ::::::::::.::.:::::::::::::::::::::::::::::::::::::::::::::: gi|766 STNSGHSDCSISMANLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE 380 390 400 410 420 430 160 170 KIAA00 EGISDLFDAYDLEKLPLVEDFMCS :::::::::::::::::::::::: gi|766 EGISDLFDAYDLEKLPLVEDFMCS 440 450 460 174 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 18:56:03 2009 done: Tue Mar 3 19:02:23 2009 Total Scan time: 1189.950 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]