hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16390270/chunk_1/iprscan-20080501-16390270.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0074 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05786.4.ls Barren protein 1675.2 0 1 PF05786.4.fs Barren protein 1673.3 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05786.4.fs 1/1 33 746 .. 1 836 [] 1673.3 0 PF05786.4.ls 1/1 33 746 .. 1 836 [] 1675.2 0 Alignments of top-scoring domains: PF05786.4.fs: domain 1 of 1, from 33 to 746: score 1673.3, E = 0 *->ltpservkPasrpakapYqerisaplTPvLedfpsNDDEkEReqaRr ++pserv+P+++p+kap +++p+TPvLedfp+NDDEkER q+Rr KIAA0074 33 SSPSERVFPMPLPRKAP----LNIPGTPVLEDFPQNDDEKERLQRRR 75 sRvldlqfstadSpallaSpifargsqdetetipklentQItEhysnCIK sRv+dlqfst dSp+llaSp+ ++s+d+++tipk++ntQItEhys+CIK KIAA0074 76 SRVFDLQFST-DSPRLLASPS--SRSIDISATIPKFTNTQITEHYSTCIK 122 LssENKIttKNAfgLhLIDflseILKhkDENkeeTNFKvAagTLeAStKI Ls+ENKIttKNAfgLhLIDf+seILK+kD +e+TNFKvAagTL+AStKI KIAA0074 123 LSTENKITTKNAFGLHLIDFMSEILKQKD--TEPTNFKVAAGTLDASTKI 170 YavRVDsVHaDvYrVLGGLgkdgpddltDkeiaagevedgPQGEqasgtg YavRVD+VHaDvYrVLGGLgkd+p +++e ++g+v+dg s+t+ KIAA0074 171 YAVRVDAVHADVYRVLGGLGKDAP---SLEE-VEGHVADG------SATE 210 qdstqqaakeakkkPkkkKkplsTiEkNlnaLNvSelDracavDPlFqKt +++t +k+ +++kkK++++TiE+N+n+LNvSe+Dr+c++DP+FqKt KIAA0074 211 MGTT---KKA---VKPKKKHLHRTIEQNINNLNVSEADRKCEIDPMFQKT 254 aAsFDEsstaGvfLstLkcqsYrSELlFdsdeifvktlSSaeEeqelpti aAsFDE+staGvfLstL+cq+YrSELlF+sd v+tlS+ +E++elp+ KIAA0074 255 AASFDECSTAGVFLSTLHCQDYRSELLFPSD---VQTLST-GEPLELPE- 299 DLgfVdGLALLADmPrsTlvavllqyaaTdLkvkflarleQclLnmaEkr Lg+V+ +TdLk a+l+Qc aE+r KIAA0074 300 -LGCVE---------------------MTDLK----APLQQC----AEDR 319 eLcPSLaGfqftSAPNPKSANEKAieqwdsEthnEslsalvDkqfkKsdq ++cPSLaGfqf +qwdsEthnEs+salvDk fkK+dq KIAA0074 320 QICPSLAGFQF--------------TQWDSETHNESVSALVDK-FKKNDQ 354 vFDINAEveddpdLDDegyddpdgplvdEfdsNDveEltaagdaEefrsw vFDINAEv+++ +++d+pdg+l+d+fd+ND++++ta+gd+Eefrsw KIAA0074 355 VFDINAEVDES-----DCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSW 399 keaCqvqskViNqeevislgdeDIetmcpllsvkpgEYSYfspdrtmsmW ke+Cqvqs+ qee+islgd+DI+tmcplls+kpgEYSYfsp rtmsmW KIAA0074 400 KEPCQVQSC---QEEMISLGDGDIRTMCPLLSMKPGEYSYFSP-RTMSMW 445 AGPdHWkFRprrkqdvfaseidstdtaekrkKkaKKefELnFeRRAkalD AGPdHW+FRprrkq d+++++e++kK++KK+fE++Fe +++D KIAA0074 446 AGPDHWRFRPRRKQ-------DAPSQSENKKKSTKKDFEIDFE---DDID 485 feNVtevyFFAqktkaatlLtKsNtlesqnprkTtLPtDFhYdpDnlikl f +vyF +ktkaat+LtKs tle+qn+r+TtLPtDF+Y++D+l++l KIAA0074 486 F----DVYF--RKTKAATILTKS-TLENQNWRATTLPTDFNYNVDTLVQL 528 eLkPsvrllKaaqepssdseqdedIeDyDynnpNDtsNfcpgLqaadftd +LkP++rllK+aq+++ ++e++e+IeDyDynnpNDtsNfcpgLqaad KIAA0074 529 HLKPGTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAAD--- 575 AVPsddediddlAAEqAAEasflgPvGtlDLesdPchppktadenglitq sdded+ddl f+gPvG++DL+++Pchppkta++ng+ t+ KIAA0074 576 ---SDDEDLDDL---------FVGPVGNSDLSPYPCHPPKTAQQNGD-TP 612 enaenditvtedgeelvaaPqkVNKIevqYAKtAKkmDmKkLKkSmWSLL e++++dit t+++++lva+PqkVNKIe++YAKtAKkmDmKkLK+SmWSLL KIAA0074 613 EAQGLDIT-TYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLL 661 qkssLNAqpeedipsnhkesgeEeakaevadeksFsgltkdLpDdrLppv +++s ++e+d+++nh+e+g+E+a aevadek++sgltkdL+ ++Lppv KIAA0074 662 TALS---GKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQ-RSLPPV 707 MaQnLSppLAFaCLLHLANEkNLkLiGteDLsDvlIrQa<-* MaQnLS+pLAFaCLLHLANEkNLkL+GteDLsDvl+rQ+ KIAA0074 708 MAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQG 746 PF05786.4.ls: domain 1 of 1, from 33 to 746: score 1675.2, E = 0 *->ltpservkPasrpakapYqerisaplTPvLedfpsNDDEkEReqaRr ++pserv+P+++p+kap +++p+TPvLedfp+NDDEkER q+Rr KIAA0074 33 SSPSERVFPMPLPRKAP----LNIPGTPVLEDFPQNDDEKERLQRRR 75 sRvldlqfstadSpallaSpifargsqdetetipklentQItEhysnCIK sRv+dlqfst dSp+llaSp+ ++s+d+++tipk++ntQItEhys+CIK KIAA0074 76 SRVFDLQFST-DSPRLLASPS--SRSIDISATIPKFTNTQITEHYSTCIK 122 LssENKIttKNAfgLhLIDflseILKhkDENkeeTNFKvAagTLeAStKI Ls+ENKIttKNAfgLhLIDf+seILK+kD +e+TNFKvAagTL+AStKI KIAA0074 123 LSTENKITTKNAFGLHLIDFMSEILKQKD--TEPTNFKVAAGTLDASTKI 170 YavRVDsVHaDvYrVLGGLgkdgpddltDkeiaagevedgPQGEqasgtg YavRVD+VHaDvYrVLGGLgkd+p +++e ++g+v+dg s+t+ KIAA0074 171 YAVRVDAVHADVYRVLGGLGKDAP---SLEE-VEGHVADG------SATE 210 qdstqqaakeakkkPkkkKkplsTiEkNlnaLNvSelDracavDPlFqKt +++t +k+ +++kkK++++TiE+N+n+LNvSe+Dr+c++DP+FqKt KIAA0074 211 MGTT---KKA---VKPKKKHLHRTIEQNINNLNVSEADRKCEIDPMFQKT 254 aAsFDEsstaGvfLstLkcqsYrSELlFdsdeifvktlSSaeEeqelpti aAsFDE+staGvfLstL+cq+YrSELlF+sd v+tlS+ +E++elp+ KIAA0074 255 AASFDECSTAGVFLSTLHCQDYRSELLFPSD---VQTLST-GEPLELPE- 299 DLgfVdGLALLADmPrsTlvavllqyaaTdLkvkflarleQclLnmaEkr Lg+V+ +TdLk a+l+Qc aE+r KIAA0074 300 -LGCVE---------------------MTDLK----APLQQC----AEDR 319 eLcPSLaGfqftSAPNPKSANEKAieqwdsEthnEslsalvDkqfkKsdq ++cPSLaGfqf +qwdsEthnEs+salvDk fkK+dq KIAA0074 320 QICPSLAGFQF--------------TQWDSETHNESVSALVDK-FKKNDQ 354 vFDINAEveddpdLDDegyddpdgplvdEfdsNDveEltaagdaEefrsw vFDINAEv+++ +++d+pdg+l+d+fd+ND++++ta+gd+Eefrsw KIAA0074 355 VFDINAEVDES-----DCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSW 399 keaCqvqskViNqeevislgdeDIetmcpllsvkpgEYSYfspdrtmsmW ke+Cqvqs+ qee+islgd+DI+tmcplls+kpgEYSYfsp rtmsmW KIAA0074 400 KEPCQVQSC---QEEMISLGDGDIRTMCPLLSMKPGEYSYFSP-RTMSMW 445 AGPdHWkFRprrkqdvfaseidstdtaekrkKkaKKefELnFeRRAkalD AGPdHW+FRprrkq d+++++e++kK++KK+fE++Fe +++D KIAA0074 446 AGPDHWRFRPRRKQ-------DAPSQSENKKKSTKKDFEIDFE---DDID 485 feNVtevyFFAqktkaatlLtKsNtlesqnprkTtLPtDFhYdpDnlikl f +vyF +ktkaat+LtKs tle+qn+r+TtLPtDF+Y++D+l++l KIAA0074 486 F----DVYF--RKTKAATILTKS-TLENQNWRATTLPTDFNYNVDTLVQL 528 eLkPsvrllKaaqepssdseqdedIeDyDynnpNDtsNfcpgLqaadftd +LkP++rllK+aq+++ ++e++e+IeDyDynnpNDtsNfcpgLqaad KIAA0074 529 HLKPGTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAAD--- 575 AVPsddediddlAAEqAAEasflgPvGtlDLesdPchppktadenglitq sdded+ddl f+gPvG++DL+++Pchppkta++ng+ t+ KIAA0074 576 ---SDDEDLDDL---------FVGPVGNSDLSPYPCHPPKTAQQNGD-TP 612 enaenditvtedgeelvaaPqkVNKIevqYAKtAKkmDmKkLKkSmWSLL e++++dit t+++++lva+PqkVNKIe++YAKtAKkmDmKkLK+SmWSLL KIAA0074 613 EAQGLDIT-TYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLL 661 qkssLNAqpeedipsnhkesgeEeakaevadeksFsgltkdLpDdrLppv +++s ++e+d+++nh+e+g+E+a aevadek++sgltkdL+ ++Lppv KIAA0074 662 TALS---GKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQ-RSLPPV 707 MaQnLSppLAFaCLLHLANEkNLkLiGteDLsDvlIrQa<-* MaQnLS+pLAFaCLLHLANEkNLkL+GteDLsDvl+rQ+ KIAA0074 708 MAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQG 746 //