hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16335849/chunk_1/iprscan-20080501-16335849.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0071 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01448.14.fs ELM2 domain 92.6 2.8e-26 1 PF01448.14.ls ELM2 domain 94.4 3.2e-25 1 PF00249.21.ls Myb-like DNA-binding domain 84.1 4e-22 2 PF00249.21.fs Myb-like DNA-binding domain 80.7 4.1e-21 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01448.14.fs 1/1 14 78 .. 1 82 [] 92.6 2.8e-26 PF01448.14.ls 1/1 14 78 .. 1 82 [] 94.4 3.2e-25 PF00249.21.fs 1/2 103 148 .. 1 65 [] 40.3 4.8e-10 PF00249.21.ls 1/2 103 148 .. 1 65 [] 42.0 1.9e-09 PF00249.21.fs 2/2 294 339 .. 1 65 [] 40.4 4.4e-10 PF00249.21.ls 2/2 294 339 .. 1 65 [] 42.1 1.7e-09 Alignments of top-scoring domains: PF01448.14.fs: domain 1 of 1, from 14 to 78: score 92.6, E = 2.8e-26 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel g++rVG++yQA+vP+f ++ + +++s++r++ l++l KIAA0071 14 GGMRVGPQYQAVVPDF----DPAKLARRSQERDN---------LGML 47 vWsPeDsqnqlddekideylrlarskksirtfera<-* vWsP+ ++l+++k+dey++ a++ k+++++e+a KIAA0071 48 VWSPN---QNLSEAKLDEYIAIAKE-KHGYNMEQA 78 PF01448.14.ls: domain 1 of 1, from 14 to 78: score 94.4, E = 3.2e-25 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel g++rVG++yQA+vP+f ++ + +++s++r++ l++l KIAA0071 14 GGMRVGPQYQAVVPDF----DPAKLARRSQERDN---------LGML 47 vWsPeDsqnqlddekideylrlarskksirtfera<-* vWsP+ ++l+++k+dey++ a++ k+++++e+a KIAA0071 48 VWSPN---QNLSEAKLDEYIAIAKE-KHGYNMEQA 78 PF00249.21.fs: domain 1 of 2, from 103 to 148: score 40.3, E = 4.8e-10 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++Wt e++ l+++a++ hGk +++I ++l+ KIAA0071 103 PDEWTVEDKVLFEQAFSFHGKT-----------FHRIQQMLP----- 133 nvlgrtaeqcklryykyk<-* +++ +++ +yy +k KIAA0071 134 ---DKSIASLVKFYYSWK 148 PF00249.21.ls: domain 1 of 2, from 103 to 148: score 42.0, E = 1.9e-09 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++Wt e++ l+++a++ hGk +++I ++l+ KIAA0071 103 PDEWTVEDKVLFEQAFSFHGKT-----------FHRIQQMLP----- 133 nvlgrtaeqcklryykyk<-* +++ +++ +yy +k KIAA0071 134 ---DKSIASLVKFYYSWK 148 PF00249.21.fs: domain 2 of 2, from 294 to 339: score 40.4, E = 4.4e-10 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn rWt eE l v+a++k+G + ++ I++ +g KIAA0071 294 NARWTTEEQLLAVQAIRKYGRD-----------FQAISDVIG----- 324 nvlgrtaeqcklryykyk<-* ++++ q+k+++ +y+ KIAA0071 325 ---NKSVVQVKNFFVNYR 339 PF00249.21.ls: domain 2 of 2, from 294 to 339: score 42.1, E = 1.7e-09 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn rWt eE l v+a++k+G + ++ I++ +g KIAA0071 294 NARWTTEEQLLAVQAIRKYGRD-----------FQAISDVIG----- 324 nvlgrtaeqcklryykyk<-* ++++ q+k+++ +y+ KIAA0071 325 ---NKSVVQVKNFFVNYR 339 //