# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00472.fasta.huge -Q ../query/KIAA0071.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0071, 396 aa vs ./tmplib.23147 library 1987109 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.3175+/-0.00626; mu= 6.3457+/- 0.425 mean_var=129.6349+/-30.818, 0's: 0 Z-trim: 8 B-trim: 48 in 1/39 Lambda= 0.112645 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1343 ( 520 res) fj00420 ( 520) 917 160.1 2.8e-40 KIAA1047 ( 2348 res) hh01221s1 (2348) 318 63.3 1.6e-10 KIAA1266 ( 601 res) hj06235 ( 601) 176 39.7 0.00054 KIAA1193 ( 544 res) fg00739 ( 544) 157 36.6 0.0043 KIAA1610 ( 484 res) fj11544 ( 484) 153 35.9 0.0062 >>KIAA1343 ( 520 res) fj00420 (520 aa) initn: 1577 init1: 759 opt: 917 Z-score: 815.1 bits: 160.1 E(): 2.8e-40 Smith-Waterman score: 1624; 64.416% identity (84.675% similar) in 385 aa overlap (15-385:25-407) 10 20 30 40 50 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWS ::::: .::: .:.:::. : . ..:: :::::: KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPG--ATKYTDKDNGGMLVWS 10 20 30 40 50 60 70 80 90 100 110 KIAA00 PNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVED : ... .:::::::::::::::::.::::::::::::::::::::::::::::::::::: KIAA13 PYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVED 60 70 80 90 100 110 120 130 140 150 160 KIAA00 KVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARK--QKRER :::::::::::::.:::::::::::.::::::.::::::::..::.:::.::: ..... KIAA13 KVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQ 120 130 140 150 160 170 170 180 190 200 210 220 KIAA00 EESEDELEEANGNNPIDIEVDQNKESKKE---VPPTET--VPQVKKEKHSTQAKNRAKR- .:.:..::.. . : . : .::.::: :..: . ..: .: : .....: KIAA13 GDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRS 180 190 200 210 220 230 230 240 250 260 270 280 KIAA00 --KPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGG .:::::.:.:::: ::: . .::.:.::::::::.:.:::.:: ::.:::::.:..:: KIAA13 KCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGG 240 250 260 270 280 290 290 300 310 320 330 340 KIAA00 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR :: .. :: :: ::::::::::::::..::::.:::::.::::::.: ::::::::::: KIAA13 IEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRR 300 310 320 330 340 350 350 360 370 380 390 KIAA00 RFNIDEVLQEWEAEHGKEETNGPSNQ--KPVKSPDN--SIKMPEEEDEAPVLDVRYASAS :::..:::::::::.: . .:: .. . .:: .: : : .::.:: KIAA13 RFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGP 360 370 380 390 400 410 KIAA13 SPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPP 420 430 440 450 460 470 >>KIAA1047 ( 2348 res) hh01221s1 (2348 aa) initn: 271 init1: 184 opt: 318 Z-score: 280.7 bits: 63.3 E(): 1.6e-10 Smith-Waterman score: 318; 25.773% identity (57.388% similar) in 291 aa overlap (102-383:447-724) 80 90 100 110 120 130 KIAA00 GYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQM : . :: ..: .:.. : : :.: : .. KIAA10 MMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASY 420 430 440 450 460 470 140 150 160 170 180 KIAA00 LPDKSIASLVKFYYSWKKTRTKTSVMDRH-----ARKQKREREESEDELEEANGNNPIDI : ::. . : .:: ::... ... :. .:.:. : .:...:: . .. KIAA10 LERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKT 480 490 500 510 520 530 190 200 210 220 230 240 KIAA00 EVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAAT : ...: ::. . : ::.... ... : : ..: .:. . .:. KIAA10 E--KKEEEKKD-------EEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTAN 540 550 560 570 580 250 260 270 280 290 300 KIAA00 TVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCN-ARWTTEEQLLA . :. :. . . . .: :. . : : . . .::: ::. .: KIAA10 SQGRRKGRITRSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVA 590 600 610 620 630 640 310 320 330 340 350 360 KIAA00 VQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSN ... ..::.. ::. ..:.:: .: :::. ::.:: :.:..::. : .. . : . KIAA10 KKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQ----HKQKTSRKPRE 650 660 670 680 690 700 370 380 390 KIAA00 QKPV---KSPDNSIKMPEEEDEAPVLDVRYASAS .. : .: .... :.:: KIAA10 ERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEGAENSSDTESAPSPSPVEAVKPSED 710 720 730 740 750 760 >>KIAA1266 ( 601 res) hj06235 (601 aa) initn: 254 init1: 81 opt: 176 Z-score: 163.5 bits: 39.7 E(): 0.00054 Smith-Waterman score: 238; 26.633% identity (59.296% similar) in 199 aa overlap (14-177:156-344) 10 20 30 40 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDN : .::::.::: .:.. : .:.::.. KIAA12 ESVLSYLDKEDTFFYSLVYDPSLKTLLADKGEIRVGPRYQADIPEM---LLEGESDEREQ 130 140 150 160 170 180 50 60 70 KIAA00 --LGMLVWSPNQNLSEAKLDEYIAIAKE--------------------------KHGYNM : . ::.::. :.. ..:.....:. .. .. KIAA12 SKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITL 190 200 210 220 230 240 80 90 100 110 120 KIAA00 EQALGMLFWHKHNIEKSLADL-PNFTPF-----PDEWTVEDKVLFEQAFSFHGKTFHRIQ .:. :. :.... .... : : : .::.. . :::.:. .:: :. :. KIAA12 FHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASLFEEALEKYGKDFNDIR 250 260 270 280 290 300 130 140 150 160 170 180 KIAA00 Q-MLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEV : .:: ::..:....:: :: : ::...... . :.:..:.. KIAA12 QDFLPWKSLTSIIEYYYMWKTT-------DRYVQQKRLKAAEAESKLKQVYIPTYKPNPN 310 320 330 340 350 190 200 210 220 230 240 KIAA00 DQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTV KIAA12 QISTSNGKPGAVNGAVGTTFQPQNPLLGRACESCYATQSHQWYSWGPPNMQCRLCAICWL 360 370 380 390 400 410 >>KIAA1193 ( 544 res) fg00739 (544 aa) initn: 157 init1: 72 opt: 157 Z-score: 147.4 bits: 36.6 E(): 0.0043 Smith-Waterman score: 217; 28.910% identity (56.872% similar) in 211 aa overlap (1-183:175-380) 10 20 KIAA00 GSSGSSSDEEHGGGGMR------VGPQYQA :::.::. :: . . . ::::.:: KIAA11 LTPSVTSHEASDLFPNRSGSRFLADEDREPGSSASSDTEEDSLPANKCKKEIMVGPQFQA 150 160 170 180 190 200 30 40 50 60 70 KIAA00 VVPDFDPAKLARRSQE-RDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNM-------- :.. .: :. .. .: .:.:.:. : : ...:.. : ... ..: KIAA11 ---DLSNLHLNRHCEKIYENEDQLLWDPSV-LPEREVEEFLYRAVKRRWHEMAGPQLPEG 210 220 230 240 250 260 80 90 100 110 120 KIAA00 ------EQALGMLFWHKHNIEKSLADLP-NFTPFPD---EWTVEDKVLFEQAFSFHGKTF :::: : . :.:..: : : . : :. :. ::..: :::.: KIAA11 EAVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNF 270 280 290 300 310 320 130 140 150 160 170 180 KIAA00 HRIQ-QMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES--EDELEEANGNN : :: . . .:.. :..:: :::.. . . . ...: .:. : : .. .:.. KIAA11 HLIQANKVRTRSVGECVEYYYLWKKSE-RYDYFAQQTRLGRRKYVPSGTTDADQDLDGSD 330 340 350 360 370 190 200 210 220 230 240 KIAA00 PIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANA : KIAA11 PDGPGRPRPEQDTLTGMRTDPLSVDGTAGGLDEPGVASDGLPSSEPGPCSFQQLDESPAV 380 390 400 410 420 430 >>KIAA1610 ( 484 res) fj11544 (484 aa) initn: 149 init1: 76 opt: 153 Z-score: 144.5 bits: 35.9 E(): 0.0062 Smith-Waterman score: 170; 26.829% identity (50.000% similar) in 246 aa overlap (18-236:156-392) 10 20 30 40 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGML :: ..:: .: . . . .: .: KIAA16 KYFDTNSEVEEESEEDEDYIPSEDWKKEIMVGSMFQAEIP-VGICRYKENEKVYENDDQL 130 140 150 160 170 180 50 60 70 80 90 KIAA00 VWSPNQNLSEAKL------------DE--YIAIAKEKHGYNMEQALGMLFWHKHNIEKSL .:.: . : : :. :: :: . .: . :::: : . . :..: KIAA16 LWDP-EYLPEDKVIIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEAL 190 200 210 220 230 240 100 110 120 130 140 KIAA00 ADLP-NFTPFPDE---WTVEDKVLFEQAFSFHGKTFHRIQ-QMLPDKSIASLVKFYYSWK : : .: :: :. :::... .:: :: :: . . .:.. : ::: :: KIAA16 RRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWK 250 260 270 280 290 300 150 160 170 180 190 200 KIAA00 KTRTKT--SVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPP----TE :.. . . : ..:. . : ... .: : .. :. :: . KIAA16 KSERYDFFAQQTRFGKKKYNLHPGVTDYMDRL-----LD-ESESAASSRAPSPPPTASNS 310 320 330 340 350 210 220 230 240 250 260 KIAA00 TVPQVKKEKH--STQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVK . : .:: :: .: .. . : : .:..:.:. KIAA16 SNSQSEKEDGTVSTANQNGVSSNGP-GEILNKEEVKVEGLHINGPTGGNKKPLHADMDTN 360 370 380 390 400 410 270 280 290 300 310 320 KIAA00 RQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAIS KIAA16 GYETDNLTTDPKLAHMTARNENDFDEKSERPAKRRRVNSNGKESPGSSEFFQEAVSHGKF 420 430 440 450 460 470 396 residues in 1 query sequences 1987109 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:45 2008 done: Thu Dec 18 15:06:45 2008 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]