hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16321697/chunk_1/iprscan-20080501-16321697.nocrc
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Query sequence: KIAA0070
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00499 lysS_bact: lysyl-tRNA synthetase              697.1   4.3e-207   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00499   1/1      76   581 ..     1   538 []   697.1 4.3e-207

Alignments of top-scoring domains:
TIGR00499: domain 1 of 1, from 76 to 581: score 697.1, E = 4.3e-207
                   *->dlndelqtrleklgrlretgnnpypndkferthssaeflekyadlsg
                      d+n++ + r++ + +l+ +g++pyp+ kf++++s ++f+ ky +l  
    KIAA0070    76    DPNQYYKIRSQAIHQLKVNGEDPYPH-KFHVDISLTDFIQKYSHLQP 121  

                   eatleleekPelevsiaGrilalrfsggkatfitlqdesGlkndgqlqly
                   ++  +l+   ++++ +aGri+a+r sggk+ f++l +e+     ++lq++
    KIAA0070   122 GD--HLT---DITLKVAGRIHAKRASGGKLIFYDLRGEG-----VKLQVM 161  

                   vnkddlGGpePdfyefdeylnfldlGdiigvtGypGpfktktgelslhvt
                    n  ++   e +f +++++l    +Gdiigv G p   ktk+gels++  
    KIAA0070   162 ANSRNYKSEE-EFIHINNKL---RRGDIIGVQGNP--GKTKKGELSIIPY 205  

                   elqlltkalrplPdkwhGltdqetryrqryldlivnpdsrdtflkrskii
                   e+ ll+++l++lP  ++Gl+d etryrqryldli+n+ +r+ f++rskii
    KIAA0070   206 EITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKII 255  

                   aairrflddrgflevetPllqvipgGanarPfithhnaldldlylriape
                   ++ir+fld+ gfle+etP++++ipgGa a+Pfit+hn ld+ ly+riape
    KIAA0070   256 TYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 305  

                   lylkrlvvgGlekvyeigrnfrneGvdtthnpeftslefyqayadyedll
                   ly k lvvgG+++vyeigr+frneG+d thnpeft++efy+ayady+dl+
    KIAA0070   306 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 355  

                   dltenlfkflakellgttkitrlPvPktfpeltygdleldlkkpwkritm
                   ++te++++ ++k ++g++k+t++P          +  ++d+++p++ri+m
    KIAA0070   356 EITEKMVSGMVKHITGSYKVTYHP-----DGPEGQAYDVDFTPPFRRINM 400  

                   ldalkkydlletgidfddlkddetakalakelgikyfevaedsgpltlgh
                   +++l+k   ++ +   + ++++et k l    +    +  e+++p t ++
    KIAA0070   401 VEELEKALGMKLP-ETNLFETEETRKILDDICVA---KAVECPPPRTTAR 446  

                   ilnelfeeflehtliqtlPtfitgyPaeisPlakrnpsnpeltdrfelfi
                   +l++l++efle t+i+  Ptfi ++P+++sPlak ++s+ +lt+rfelf+
    KIAA0070   447 LLDKLVGEFLEVTCIN--PTFICDHPQIMSPLAKWHRSKEGLTERFELFV 494  

                   ggkeianafselndpldqrerfeaqlaekeagGnktddeaplldedfvea
                     kei+na++elndp+ qr+ fe+q+++k+ag    ddea+++de+f++a
    KIAA0070   495 MKKEICNAYTELNDPMRQRQLFEEQAKAKAAG----DDEAMFIDENFCTA 540  

                   leyGlPPtgGlGiGidrlvmlltdspsirdvllfpalrpdk<-*
                   leyGlPPt+G+G+Gidr++m+ltds++i++vllfpa++p+    
    KIAA0070   541 LEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED    581  

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