hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16240507/chunk_1/iprscan-20080501-16240507.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0065 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 446.0 2e-129 16 SM00349 152.0 6e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 50 110 .. 1 62 [] 152.0 6e-41 SM00355 1/16 366 388 .. 1 23 [] 28.2 0.0011 SM00355 2/16 394 416 .. 1 23 [] 28.6 0.00086 SM00355 3/16 422 444 .. 1 23 [] 30.8 0.00019 SM00355 4/16 450 472 .. 1 23 [] 31.0 0.00017 SM00355 5/16 478 500 .. 1 23 [] 23.3 0.033 SM00355 6/16 506 528 .. 1 23 [] 29.5 0.00047 SM00355 7/16 534 556 .. 1 23 [] 26.7 0.0032 SM00355 8/16 562 584 .. 1 23 [] 24.7 0.013 SM00355 9/16 590 612 .. 1 23 [] 29.0 0.00064 SM00355 10/16 618 640 .. 1 23 [] 27.4 0.002 SM00355 11/16 646 668 .. 1 23 [] 31.3 0.00013 SM00355 12/16 674 696 .. 1 23 [] 30.4 0.00025 SM00355 13/16 702 724 .. 1 23 [] 25.5 0.0073 SM00355 14/16 730 752 .. 1 23 [] 25.5 0.0074 SM00355 15/16 758 780 .. 1 23 [] 25.7 0.0065 SM00355 16/16 786 808 .. 1 23 [] 28.4 0.00096 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 50 to 110: score 152.0, E = 6e-41 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk V+F+DV+V F+qEEW++LDp+Qr+LYRdVMlENYsnLvS+G ++v+k KIAA0065 50 VSFKDVTVGFTQEEWQHLDPSQRALYRDVMLENYSNLVSVG-YCVHK 95 pdliskLEqgeEpwi<-* p++i++L+qgeEpw KIAA0065 96 PEVIFRLQQGEEPWK 110 SM00355: domain 1 of 16, from 366 to 388: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f k++L+rH+rvH KIAA0065 366 FECNE-CGKAFWEKsHLTRHQRVH 388 SM00355: domain 2 of 16, from 394 to 416: score 28.6, E = 0.00086 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C k f +k++L++H+r+H KIAA0065 394 FQCNE-CEKAFWDKsNLTKHQRSH 416 SM00355: domain 3 of 16, from 422 to 444: score 30.8, E = 0.00019 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk fs+k+aL+ H+r+H KIAA0065 422 FECNE-CGKAFSHKsALTLHQRTH 444 SM00355: domain 4 of 16, from 450 to 472: score 31.0, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+f++k++L++H+r+H KIAA0065 450 YQCNA-CGKTFCQKsDLTKHQRTH 472 SM00355: domain 5 of 16, from 478 to 500: score 23.3, E = 0.033 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf+ ++Lk H+r+H KIAA0065 478 YECYE-CGKSFRVTsHLKVHQRTH 500 SM00355: domain 6 of 16, from 506 to 528: score 29.5, E = 0.00047 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgksfs k++L++H+r+H KIAA0065 506 FECLE-CGKSFSEKsNLTQHQRIH 528 SM00355: domain 7 of 16, from 534 to 556: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+f +k+ L+rH+ +H KIAA0065 534 YECNA-CGKTFYHKsLLTRHQIIH 556 SM00355: domain 8 of 16, from 562 to 584: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f+ k++L+ H+r+H KIAA0065 562 YECYE-CGKTFCLKsDLTVHQRTH 584 SM00355: domain 9 of 16, from 590 to 612: score 29.0, E = 0.00064 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ Cgk fs+k+ L +H+r+H KIAA0065 590 FACPE-CGKFFSHKsTLSQHYRTH 612 SM00355: domain 10 of 16, from 618 to 640: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +k+ L++H r+H KIAA0065 618 YECHE-CGKIFYNKsYLTKHNRTH 640 SM00355: domain 11 of 16, from 646 to 668: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +k++L++H+r+H KIAA0065 646 YECNE-CGKAFYQKsQLTQHQRIH 668 SM00355: domain 12 of 16, from 674 to 696: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++k+aL+ H+r+H KIAA0065 674 YKCNE-CGKAFCHKsALIVHQRTH 696 SM00355: domain 13 of 16, from 702 to 724: score 25.5, E = 0.0073 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksf+ k+ L+ H r+H KIAA0065 702 YKCNE-CGKSFCVKsGLIFHERKH 724 SM00355: domain 14 of 16, from 730 to 752: score 25.5, E = 0.0074 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++k++L+ H r H KIAA0065 730 YECNE-CGKFFRHKsSLTVHHRAH 752 SM00355: domain 15 of 16, from 758 to 780: score 25.7, E = 0.0065 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgk f +k++L +H+r+H KIAA0065 758 CQCNE-CGKIFYRKsELAQHQRSH 780 SM00355: domain 16 of 16, from 786 to 808: score 28.4, E = 0.00096 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C k+fs+k++L+ H+r+H KIAA0065 786 YECNT-CRKTFSQKsNLIVHQRRH 808 //