hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16240507/chunk_1/iprscan-20080501-16240507.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0065 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 544.3 1.1e-160 16 PF00096.16.fs Zinc finger, C2H2 type 519.6 3.1e-153 17 PF01352.17.fs KRAB box 101.4 3.4e-28 1 PF01352.17.ls KRAB box 103.4 6.3e-28 1 PF01286.9.fs XPA protein N-terminal 59.9 2.6e-16 14 PF01096.9.fs Transcription factor S-II (TFIIS) 38.5 3.2e-11 14 PF07754.2.fs Domain of unknown function (DUF1610) 33.7 5.2e-08 10 PF07754.2.ls Domain of unknown function (DUF1610) 30.4 6e-06 4 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.2 1.4e-05 10 PF00320.17.fs GATA zinc finger 19.8 5e-05 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 50 90 .. 1 41 [] 101.4 3.4e-28 PF01352.17.ls 1/1 50 90 .. 1 41 [] 103.4 6.3e-28 PF00096.16.fs 2/17 366 388 .. 1 24 [] 29.4 4.4e-06 PF00096.16.ls 1/16 366 388 .. 1 24 [] 31.4 2.9e-06 PF00096.16.fs 3/17 394 416 .. 1 24 [] 30.3 2.7e-06 PF00096.16.ls 2/16 394 416 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 4/17 422 444 .. 1 24 [] 36.2 9.2e-08 PF00096.16.ls 3/16 422 444 .. 1 24 [] 38.1 2.7e-08 PF00096.16.fs 5/17 450 472 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 4/16 450 472 .. 1 24 [] 36.1 1.1e-07 PF00096.16.ls 5/16 478 500 .. 1 24 [] 34.4 3.6e-07 PF00096.16.fs 6/17 478 500 .. 1 24 [] 32.5 7.7e-07 PF00096.16.fs 7/17 506 528 .. 1 24 [] 35.2 1.6e-07 PF00096.16.ls 6/16 506 528 .. 1 24 [] 37.1 5.5e-08 PF00096.16.ls 7/16 534 556 .. 1 24 [] 33.0 1e-06 PF00096.16.fs 8/17 534 556 .. 1 24 [] 31.0 1.8e-06 PF00096.16.ls 8/16 562 584 .. 1 24 [] 33.1 9.2e-07 PF00096.16.fs 9/17 562 584 .. 1 24 [] 31.1 1.7e-06 PF00096.16.ls 9/16 590 612 .. 1 24 [] 35.2 2.1e-07 PF00096.16.fs 10/17 590 612 .. 1 24 [] 33.2 4.9e-07 PF00096.16.ls 10/16 618 640 .. 1 24 [] 31.7 2.4e-06 PF00096.16.fs 11/17 618 640 .. 1 24 [] 29.7 3.7e-06 PF00096.16.fs 12/17 646 668 .. 1 24 [] 35.6 1.3e-07 PF00096.16.ls 11/16 646 668 .. 1 24 [] 37.6 4e-08 PF00096.16.ls 12/16 674 696 .. 1 24 [] 36.2 1e-07 PF00096.16.fs 13/17 674 696 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 13/16 702 724 .. 1 24 [] 29.0 1.5e-05 PF00096.16.fs 14/17 702 724 .. 1 24 [] 27.0 1.7e-05 PF00096.16.ls 14/16 730 752 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 15/17 730 752 .. 1 24 [] 29.9 3.4e-06 PF00096.16.fs 16/17 758 780 .. 1 24 [] 29.7 3.8e-06 PF00096.16.ls 15/16 758 780 .. 1 24 [] 31.6 2.5e-06 PF00096.16.fs 17/17 786 808 .. 1 24 [] 33.7 3.8e-07 PF00096.16.ls 16/16 786 808 .. 1 24 [] 35.7 1.5e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 50 to 90: score 101.4, E = 3.4e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DV+V FtqEEW++Ldp+Qr+LYrdVMlENysnLvS+g KIAA0065 50 VSFKDVTVGFTQEEWQHLDPSQRALYRDVMLENYSNLVSVG 90 PF01352.17.ls: domain 1 of 1, from 50 to 90: score 103.4, E = 6.3e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DV+V FtqEEW++Ldp+Qr+LYrdVMlENysnLvS+g KIAA0065 50 VSFKDVTVGFTQEEWQHLDPSQRALYRDVMLENYSNLVSVG 90 PF00096.16.fs: domain 2 of 17, from 366 to 388: score 29.4, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ks+L+rH+r+H KIAA0065 366 FECN-ECGKAFWEKSHLTRHQRVH 388 PF00096.16.ls: domain 1 of 16, from 366 to 388: score 31.4, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ks+L+rH+r+H KIAA0065 366 FECN-ECGKAFWEKSHLTRHQRVH 388 PF00096.16.fs: domain 3 of 17, from 394 to 416: score 30.3, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F +ksnL++H+r+H KIAA0065 394 FQCN-ECEKAFWDKSNLTKHQRSH 416 PF00096.16.ls: domain 2 of 16, from 394 to 416: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F +ksnL++H+r+H KIAA0065 394 FQCN-ECEKAFWDKSNLTKHQRSH 416 PF00096.16.fs: domain 4 of 17, from 422 to 444: score 36.2, E = 9.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ks L+ H+rtH KIAA0065 422 FECN-ECGKAFSHKSALTLHQRTH 444 PF00096.16.ls: domain 3 of 16, from 422 to 444: score 38.1, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ks L+ H+rtH KIAA0065 422 FECN-ECGKAFSHKSALTLHQRTH 444 PF00096.16.fs: domain 5 of 17, from 450 to 472: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F++ks+L++H+rtH KIAA0065 450 YQCN-ACGKTFCQKSDLTKHQRTH 472 PF00096.16.ls: domain 4 of 16, from 450 to 472: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F++ks+L++H+rtH KIAA0065 450 YQCN-ACGKTFCQKSDLTKHQRTH 472 PF00096.16.ls: domain 5 of 16, from 478 to 500: score 34.4, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ s+Lk H+rtH KIAA0065 478 YECY-ECGKSFRVTSHLKVHQRTH 500 PF00096.16.fs: domain 6 of 17, from 478 to 500: score 32.5, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ s+Lk H+rtH KIAA0065 478 YECY-ECGKSFRVTSHLKVHQRTH 500 PF00096.16.fs: domain 7 of 17, from 506 to 528: score 35.2, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksFs ksnL++H+r+H KIAA0065 506 FECL-ECGKSFSEKSNLTQHQRIH 528 PF00096.16.ls: domain 6 of 16, from 506 to 528: score 37.1, E = 5.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksFs ksnL++H+r+H KIAA0065 506 FECL-ECGKSFSEKSNLTQHQRIH 528 PF00096.16.ls: domain 7 of 16, from 534 to 556: score 33.0, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F +ks L+rH+ +H KIAA0065 534 YECN-ACGKTFYHKSLLTRHQIIH 556 PF00096.16.fs: domain 8 of 17, from 534 to 556: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F +ks L+rH+ +H KIAA0065 534 YECN-ACGKTFYHKSLLTRHQIIH 556 PF00096.16.ls: domain 8 of 16, from 562 to 584: score 33.1, E = 9.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+ ks+L+ H+rtH KIAA0065 562 YECY-ECGKTFCLKSDLTVHQRTH 584 PF00096.16.fs: domain 9 of 17, from 562 to 584: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+ ks+L+ H+rtH KIAA0065 562 YECY-ECGKTFCLKSDLTVHQRTH 584 PF00096.16.ls: domain 9 of 16, from 590 to 612: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +Cgk Fs+ks+L +H rtH KIAA0065 590 FACP-ECGKFFSHKSTLSQHYRTH 612 PF00096.16.fs: domain 10 of 17, from 590 to 612: score 33.2, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +Cgk Fs+ks+L +H rtH KIAA0065 590 FACP-ECGKFFSHKSTLSQHYRTH 612 PF00096.16.ls: domain 10 of 16, from 618 to 640: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +ks L++H rtH KIAA0065 618 YECH-ECGKIFYNKSYLTKHNRTH 640 PF00096.16.fs: domain 11 of 17, from 618 to 640: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +ks L++H rtH KIAA0065 618 YECH-ECGKIFYNKSYLTKHNRTH 640 PF00096.16.fs: domain 12 of 17, from 646 to 668: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +ks+L++H+r+H KIAA0065 646 YECN-ECGKAFYQKSQLTQHQRIH 668 PF00096.16.ls: domain 11 of 16, from 646 to 668: score 37.6, E = 4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +ks+L++H+r+H KIAA0065 646 YECN-ECGKAFYQKSQLTQHQRIH 668 PF00096.16.ls: domain 12 of 16, from 674 to 696: score 36.2, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ks L H+rtH KIAA0065 674 YKCN-ECGKAFCHKSALIVHQRTH 696 PF00096.16.fs: domain 13 of 17, from 674 to 696: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ks L H+rtH KIAA0065 674 YKCN-ECGKAFCHKSALIVHQRTH 696 PF00096.16.ls: domain 13 of 16, from 702 to 724: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+ ks L H r+H KIAA0065 702 YKCN-ECGKSFCVKSGLIFHERKH 724 PF00096.16.fs: domain 14 of 17, from 702 to 724: score 27.0, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF+ ks L H r+H KIAA0065 702 YKCN-ECGKSFCVKSGLIFHERKH 724 PF00096.16.ls: domain 14 of 16, from 730 to 752: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F++ks+L+ H r H KIAA0065 730 YECN-ECGKFFRHKSSLTVHHRAH 752 PF00096.16.fs: domain 15 of 17, from 730 to 752: score 29.9, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F++ks+L+ H r H KIAA0065 730 YECN-ECGKFFRHKSSLTVHHRAH 752 PF00096.16.fs: domain 16 of 17, from 758 to 780: score 29.7, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F rks+L +H+r+H KIAA0065 758 CQCN-ECGKIFYRKSELAQHQRSH 780 PF00096.16.ls: domain 15 of 16, from 758 to 780: score 31.6, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F rks+L +H+r+H KIAA0065 758 CQCN-ECGKIFYRKSELAQHQRSH 780 PF00096.16.fs: domain 17 of 17, from 786 to 808: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+Fs+ksnL H+r+H KIAA0065 786 YECN-TCRKTFSQKSNLIVHQRRH 808 PF00096.16.ls: domain 16 of 16, from 786 to 808: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+Fs+ksnL H+r+H KIAA0065 786 YECN-TCRKTFSQKSNLIVHQRRH 808 //