hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16172855/chunk_1/iprscan-20080501-16172855.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0061
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06978.2.fs Ribonucleases P/MRP protein subunit POP1       279.7    1.4e-81   1
PF06978.2.ls Ribonucleases P/MRP protein subunit POP1       266.4    5.4e-77   1
PF08170.2.fs POPLD (NUC188) domain                          169.0    1.2e-70   1
PF08170.2.ls POPLD (NUC188) domain                          170.9      3e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06978.2.fs   1/1       1   137 [.    16   171 .]   279.7  1.4e-81
PF06978.2.ls   1/1       1   137 [.     1   171 []   266.4  5.4e-77
PF08170.2.fs   1/1     496   587 ..     1   107 []   169.0  1.2e-70
PF08170.2.ls   1/1     496   587 ..     1   107 []   170.9    3e-48

Alignments of top-scoring domains:
PF06978.2.fs: domain 1 of 1, from 1 to 137: score 279.7, E = 1.4e-81
                   *->veerkkksGEvtkilskvFQrLprnmRRRamSYnvkRlpkrlrktAk
                      v  ++k      +++s+vFQ+Lpr+mRRRamS+nvkRlp+rl++ A 
    KIAA0061     1    V--TQK------SSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQ 39   

                   kelliseakiGkdHekKkkkkvkRrkkanlrTYGYfetkFirrtskkkiw
                   ke++++ +++ k+H+k+k++k++R++ ++       +++F+rr +kk+iw
    KIAA0061    40 KEAEKAVHQK-KEHSKNKCHKARRCHMNR-------TLEFNRR-QKKNIW 80   

                   LeTHvWHAKRFkMvkkWGykLaLGlrsrsKssRavyrsskrkcLihDaSY
                   LeTH+WHAKRF+MvkkWGy+L+  +r++ Ks+Ra+yr+++++cL++D+SY
    KIAA0061    81 LETHIWHAKRFHMVKKWGYCLG--ERPTVKSHRACYRAMTNRCLLQDLSY 128  

                   yecvqLegp<-*
                   y+c++L+g+   
    KIAA0061   129 YCCLELKGK    137  

PF06978.2.ls: domain 1 of 1, from 1 to 137: score 266.4, E = 5.4e-77
                   *->FaeaRakeielllkaveerkkksGEvtkilskvFQrLprnmRRRamS
                                     v  ++k      +++s+vFQ+Lpr+mRRRamS
    KIAA0061     1    ---------------V--TQK------SSNSLVFQTLPRHMRRRAMS 24   

                   YnvkRlpkrlrktAkkelliseakiGkdHekKkkkkvkRrkkanlrTYGY
                   +nvkRlp+rl++ A ke++++ +++ k+H+k+k++k++R++ ++      
    KIAA0061    25 HNVKRLPRRLQEIAQKEAEKAVHQK-KEHSKNKCHKARRCHMNR------ 67   

                   fetkFirrtskkkiwLeTHvWHAKRFkMvkkWGykLaLGlrsrsKssRav
                    +++F+rr +kk+iwLeTH+WHAKRF+MvkkWGy+L+  +r++ Ks+Ra+
    KIAA0061    68 -TLEFNRR-QKKNIWLETHIWHAKRFHMVKKWGYCLG--ERPTVKSHRAC 113  

                   yrsskrkcLihDaSYyecvqLegp<-*
                   yr+++++cL++D+SYy+c++L+g+   
    KIAA0061   114 YRAMTNRCLLQDLSYYCCLELKGK    137  

PF08170.2.fs: domain 1 of 1, from 496 to 587: score 169.0, E = 1.2e-70
                   *->gWdvilPwfWgLpfWlqLnripgvrhgGLkQlhqiafEkkalyFPiD
                      gWdv+lP++Wg++fW++++++ gvr+gGLk+  +++++k++++ P+D
    KIAA0061   496    GWDVLLPKGWGMAFWIPFIYR-GVRVGGLKESAVHSQYKRSPNVPGD 541  

                   yPdTeaGqlensvfkkkeleakYfRkPpaKRvNYeKlkdiHseelPaisG
                   +Pd++aG l+++ +++k l++kY+R+PpaKR+NY+Kl             
    KIAA0061   542 FPDCPAGMLFAE-EQAKNLLEKYKRRPPAKRPNYVKL------------- 577  

                   eigsPFsCDW<-*
                   ++++PF+C+W   
    KIAA0061   578 GTLAPFCCPW    587  

PF08170.2.ls: domain 1 of 1, from 496 to 587: score 170.9, E = 3e-48
                   *->gWdvilPwfWgLpfWlqLnripgvrhgGLkQlhqiafEkkalyFPiD
                      gWdv+lP++Wg++fW++++++ gvr+gGLk+  +++++k++++ P+D
    KIAA0061   496    GWDVLLPKGWGMAFWIPFIYR-GVRVGGLKESAVHSQYKRSPNVPGD 541  

                   yPdTeaGqlensvfkkkeleakYfRkPpaKRvNYeKlkdiHseelPaisG
                   +Pd++aG l+++ +++k l++kY+R+PpaKR+NY+Kl             
    KIAA0061   542 FPDCPAGMLFAE-EQAKNLLEKYKRRPPAKRPNYVKL------------- 577  

                   eigsPFsCDW<-*
                   ++++PF+C+W   
    KIAA0061   578 GTLAPFCCPW    587  

//