hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16085360/chunk_1/iprscan-20080501-16085360.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0056 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02985.12.ls HEAT repeat 53.3 7.6e-13 5 PF02985.12.fs HEAT repeat 44.7 1.6e-11 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 3/5 546 581 .. 1 36 [] 18.3 0.027 PF02985.12.ls 5/5 982 1018 .. 1 36 [] 13.1 0.95 Alignments of top-scoring domains: PF02985.12.ls: domain 3 of 5, from 546 to 581: score 18.3, E = 0.027 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ + ++ +l + ++D+ +VR++A++ L+++++++ KIAA0056 546 SgER-CVMAMLRRRIRDEKTNVRKSALQVLVSILKHC 581 PF02985.12.ls: domain 5 of 5, from 982 to 1018: score 13.1, E = 0.95 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +d+ +p + +l+D+dp +R++++ L++l++ KIAA0056 982 TiMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEE 1018 //