hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16071073/chunk_1/iprscan-20080501-16071073.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0055 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 422.7 1.8e-135 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 424.5 1.4e-124 1 PF08969.1.fs Domain of unknown function (DUF1873) 266.0 3.9e-78 1 PF08969.1.ls Domain of unknown function (DUF1873) 268.0 1.8e-77 1 PF00581.10.fs Rhodanese-like domain 75.9 2e-22 1 PF00581.10.ls Rhodanese-like domain 77.8 3.2e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08969.1.fs 1/1 8 115 .. 1 111 [] 266.0 3.9e-78 PF08969.1.ls 1/1 8 115 .. 1 111 [] 268.0 1.8e-77 PF00581.10.fs 1/1 186 309 .. 1 132 [] 75.9 2e-22 PF00581.10.ls 1/1 186 309 .. 1 132 [] 77.8 3.2e-20 PF00443.19.fs 1/1 776 1108 .. 1 318 [] 422.7 1.8e-135 PF00443.19.ls 1/1 776 1108 .. 1 318 [] 424.5 1.4e-124 Alignments of top-scoring domains: PF08969.1.fs: domain 1 of 1, from 8 to 115: score 266.0, E = 3.9e-78 *->slpKeLylssSLsdLeKksevkpdLRkistKsyvssArKiFkkAEec s+pKeLylssSL+dL+Kk+evkp+ kistKsyv+sA+KiFk+AEec KIAA0055 8 SVPKELYLSSSLKDLNKKTEVKPE--KISTKSYVHSALKIFKTAEEC 52 RLegDEEkAYvlYMKYlnviklikkrpDfkqhqdyvrslLGpteikkrve RL++DEE+AYvlYMKY++v++likkrpDfkq+qdy++s+LGp++ikk+ve KIAA0055 53 RLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVE 102 eaLEklseSLkeRY<-* ea E+lseSLk+RY KIAA0055 103 EA-ERLSESLKLRY 115 PF08969.1.ls: domain 1 of 1, from 8 to 115: score 268.0, E = 1.8e-77 *->slpKeLylssSLsdLeKksevkpdLRkistKsyvssArKiFkkAEec s+pKeLylssSL+dL+Kk+evkp+ kistKsyv+sA+KiFk+AEec KIAA0055 8 SVPKELYLSSSLKDLNKKTEVKPE--KISTKSYVHSALKIFKTAEEC 52 RLegDEEkAYvlYMKYlnviklikkrpDfkqhqdyvrslLGpteikkrve RL++DEE+AYvlYMKY++v++likkrpDfkq+qdy++s+LGp++ikk+ve KIAA0055 53 RLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVE 102 eaLEklseSLkeRY<-* ea E+lseSLk+RY KIAA0055 103 EA-ERLSESLKLRY 115 PF00581.10.fs: domain 1 of 1, from 186 to 309: score 75.9, E = 2e-22 *->tagelkalles.apkliliDvRspefGeryeyegGHIpgAvNvplee ta+el+ ++ +++ +li++D+R + + y+ ++I ++ vp ee KIAA0055 186 TAKELYTMMTDkNISLIIMDARRM-----QDYQDSCILHSLSVP-EE 226 eiealldrsgilpdieklhllkdpeelaklfgelgsskdkrvivycrsgr +i+ +++s+i++ hl +d ++++k+ g+ + + + + +s + KIAA0055 227 AISPGVTASWIEA-----HLPDDSKDTWKKRGNVEY---VVLLDWFSSAK 268 dl.....lrnrrsalaalllkklgypeVyiLkGGykeWlak<-* dl+ +++lr+ al+ +++k+ +e+ +L+GGy++Wl + KIAA0055 269 DLqigttLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC 309 PF00581.10.ls: domain 1 of 1, from 186 to 309: score 77.8, E = 3.2e-20 *->tagelkalles.apkliliDvRspefGeryeyegGHIpgAvNvplee ta+el+ ++ +++ +li++D+R + + y+ ++I ++ vp ee KIAA0055 186 TAKELYTMMTDkNISLIIMDARRM-----QDYQDSCILHSLSVP-EE 226 eiealldrsgilpdieklhllkdpeelaklfgelgsskdkrvivycrsgr +i+ +++s+i++ hl +d ++++k+ g+ + + + + +s + KIAA0055 227 AISPGVTASWIEA-----HLPDDSKDTWKKRGNVEY---VVLLDWFSSAK 268 dl.....lrnrrsalaalllkklgypeVyiLkGGykeWlak<-* dl+ +++lr+ al+ +++k+ +e+ +L+GGy++Wl + KIAA0055 269 DLqigttLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC 309 PF00443.19.fs: domain 1 of 1, from 776 to 1108: score 422.7, E = 1.8e-135 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl p +tGL+NlGNTCYmNS+LQcL++ p l+dyf+++ y+++in+sn l KIAA0055 776 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLL 822 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+kg++++++ +++al++g+y++++p+ fk t+gkin++f gy KIAA0055 823 GHKGEVAEEFGIIMKALWTGqYRYISPKD------FKITIGKINDQFAGY 866 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh QQD++E+llfL+dgLhedln++ ++++++e++d+++d kaa++aw +h KIAA0055 867 SQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDfKAAeHAWQKH 916 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ + nesii+ lFqGq+ks+ ++ ++++++++ + + + ++++++ KIAA0055 917 KQLNESIIVALFQGQFKStvqcltchkksrtfeafmylslplastskctl 966 RF xxxxxxxxxxxxxxxxxx ................................klkikrLPpvLiihLKRF +++ + +++++ +++++ +++++ ++++ +k+ i++LPpvL++hLKRF KIAA0055 967 qdclrlfskeekltdnnrfycshcrarrdslkKIEIWKLPPVLLVHLKRF 1016 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx syngetglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkee sy+g+ +++K+ ++V+fPle+++ s ++ ++k KIAA0055 1017 SYDGR--WKQKLQTSVDFPLENLDLSQYVIGPK----------------- 1047 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiay n+ kY+L++V++H+G +l++GHY+ay KIAA0055 1048 -----------------------NNLKKYNLFSVSNHYG-GLDGGHYTAY 1073 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ikkkkengkWykfDDekVsevteeevlersssAYiLFY<-* +k ++ +++W+kfDD+ Vs+++++ v +ss+AYiLFY KIAA0055 1074 CK-NAARQRWFKFDDHEVSDISVSSV--KSSAAYILFY 1108 PF00443.19.ls: domain 1 of 1, from 776 to 1108: score 424.5, E = 1.4e-124 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl p +tGL+NlGNTCYmNS+LQcL++ p l+dyf+++ y+++in+sn l KIAA0055 776 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLL 822 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+kg++++++ +++al++g+y++++p+ fk t+gkin++f gy KIAA0055 823 GHKGEVAEEFGIIMKALWTGqYRYISPKD------FKITIGKINDQFAGY 866 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh QQD++E+llfL+dgLhedln++ ++++++e++d+++d kaa++aw +h KIAA0055 867 SQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDfKAAeHAWQKH 916 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ + nesii+ lFqGq+ks+ ++ ++++++++ + + + ++++++ KIAA0055 917 KQLNESIIVALFQGQFKStvqcltchkksrtfeafmylslplastskctl 966 RF xxxxxxxxxxxxxxxxxx ................................klkikrLPpvLiihLKRF +++ + +++++ +++++ +++++ ++++ +k+ i++LPpvL++hLKRF KIAA0055 967 qdclrlfskeekltdnnrfycshcrarrdslkKIEIWKLPPVLLVHLKRF 1016 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx syngetglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkee sy+g+ +++K+ ++V+fPle+++ s ++ ++k KIAA0055 1017 SYDGR--WKQKLQTSVDFPLENLDLSQYVIGPK----------------- 1047 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiay n+ kY+L++V++H+G +l++GHY+ay KIAA0055 1048 -----------------------NNLKKYNLFSVSNHYG-GLDGGHYTAY 1073 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ikkkkengkWykfDDekVsevteeevlersssAYiLFY<-* +k ++ +++W+kfDD+ Vs+++++ v +ss+AYiLFY KIAA0055 1074 CK-NAARQRWFKFDDHEVSDISVSSV--KSSAAYILFY 1108 //