hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080909/iprscan-20080909-09265937/chunk_1/iprscan-20080909-09265937.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0054 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00356 30.1 0.00031 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00356 1/1 179 206 .. 1 31 [] 30.1 0.00031 Alignments of top-scoring domains: SM00356: domain 1 of 1, from 179 to 206: score 30.1, E = 0.00031 *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-* ++ +lCk+F ++G C+yG++C aH+ KIAA0054 179 SEEYTLCKRFLEQG---ICRYGAQCTSAHSQ 206 //