# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00503s1.fasta.huge -Q ../query/KIAA0054.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0054, 1943 aa vs ./tmplib.23147 library 1985562 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.2110+/- 0.01; mu= -17.2650+/- 0.672 mean_var=483.3433+/-116.404, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.058337 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1769 ( 2114 res) af00171 (2114) 770 81.2 3e-15 KIAA1631 ( 1032 res) fh15959s1 (1032) 299 41.3 0.0016 >>KIAA1769 ( 2114 res) af00171 (2114 aa) initn: 906 init1: 229 opt: 770 Z-score: 365.6 bits: 81.2 E(): 3e-15 Smith-Waterman score: 931; 40.704% identity (66.583% similar) in 398 aa overlap (700-1087:40-417) 670 680 690 700 710 720 KIAA00 PYGTGKTFTLAQAVKHILQQQETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVY : ::::.::..:.: .: .:.:.: ::::. KIAA17 VLRGSSAGHTVGALADSTEAPSKKPMSSSPSRSAADIYIREYFHSHVSGGHPEATPLRVM 10 20 30 40 50 60 730 740 750 760 770 780 KIAA00 FRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFF . .: .. . ::. ::: ... ...:. : . .. .:::::.: ::: .: . ::: KIAA17 YTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARHRVVVTT--TSQAR-ELRVPVGFF 70 80 90 100 110 120 790 800 810 820 830 840 KIAA00 THILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRL .:::.::::: .:::.. ::: :...::.::::::::..: ..: :: : . .:: :: KIAA17 SHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFS-VARARAAEHTLLHRL 130 140 150 160 170 180 850 860 870 880 890 900 KIAA00 YEHYPAEF-----PCRILLCENYRSHEAIINYTSELFYEGK---LMASGKQPAHKDFYPL . : : :... :::: .::... :. :: .: . : :: : : ::: KIAA17 FLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFYVAKGNPIHARGKVPPHPRHYPL 190 200 210 220 230 240 910 920 930 940 950 960 KIAA00 TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV : . :. .. . ... : ::. .:::.:.: :: :: .. : ::. .. :: KIAA17 MFCHVAGNPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQV 250 260 270 280 290 300 970 980 990 1000 1010 1020 KIAA00 FRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDST .: :::.. :..:.: . :.::::. :::: :::. .: . KIAA17 SALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTV---HTCQSLLSPGALAPE------ 310 320 330 340 350 1030 1040 1050 1060 1070 KIAA00 EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENSSL--H :... ..:::..::::: ..:::: .::::.: : :.:: :: : : :. . KIAA17 ------FFTDARVLNTVLTRAQSQLVVVGDAVALCSFGACGKLWESFIRECVERHSVCPE 360 370 380 390 400 1080 1090 1100 1110 1120 1130 KIAA00 GITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGSTNKQQQSPPKGKSLHHTQN :...::.. KIAA17 GLSMEQVEQGVAQRRRWPPRGTQAGAAGNWEAAPEPVGDLAEEQAAVVTAMVKAEPGDEA 410 420 430 440 450 460 >>KIAA1631 ( 1032 res) fh15959s1 (1032 aa) initn: 509 init1: 104 opt: 299 Z-score: 155.3 bits: 41.3 E(): 0.0016 Smith-Waterman score: 652; 29.895% identity (59.615% similar) in 572 aa overlap (591-1111:473-1012) 570 580 590 600 610 620 KIAA00 EEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPD ...: .:: :: .: ::. . .:.: KIAA16 KGFVHKVELDRVKLSFSMSLLSRFVDGLTFKVNFTFNRQPLRVQHRALE-LTGRWLLWPM 450 460 470 480 490 500 630 640 650 660 670 KIAA00 I-SMTPT-IPWSPN----RQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTG . ..: .: :. . .:..:. : .: .:. :.: . . : .:.:: ::: KIAA16 LFPVAPRDVPLLPSDVKLKLYDRSLES--NPEQLQAMRHIVTGTT-RPAPYIIFGPPGTG 510 520 530 540 550 680 690 700 710 720 730 KIAA00 KTFTLAQAVKHILQQ-QETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNR :: ::..:.:..... ...:: :. :::.::: : ... :.. :. .: KIAA16 KTVTLVEAIKQVVKHLPKAHILACAPSNSGADL-----LCQRLRVHLPSS-IYRLLAPSR 560 570 580 590 600 610 740 750 760 770 780 790 KIAA00 WVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHIL .. : .. : .. .. . .: :. . ..::...:: :. : . .. ::::. KIAA16 DIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIF 620 630 640 650 660 670 800 810 820 830 840 KIAA00 LDEAAQAMECETIMPLA--LATQNT-----RIVLAGDHMQLSPFVYSEFARERNLHVSLL .:::.. :: :... .: . ...: ..::::: ::.: . : ......: ::: KIAA16 IDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLL 680 690 700 710 720 730 850 860 870 880 890 KIAA00 DRL------YEHYPAEFPCRIL--LCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDF .:: :.. : . ... : .::::: .:.. ..:.:::.:.: . .. : KIAA16 ERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERF 740 750 760 770 780 790 900 910 920 930 940 KIAA00 ----------YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAW-GK-- .:. : . :.: .: :: .:.: :. :. .. : : . :: KIAA16 CRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLA--PSSKKGKAR 800 810 820 830 840 850 950 960 970 980 990 KIAA00 LDDGSIGVVTPYADQVFRIRA-------ELRK-KRLSDVNVERVLNVQGKQFRVLFLSTV :. :.::..:: :: .:: ::: ..:..: : . ::.. :...::: KIAA16 LSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 860 870 880 890 900 910 1000 1010 1020 1030 1040 1050 KIAA00 RTRHTCKHKQTPIKKKEQLLEDSTEDLDY--GFLSNYKLLNTAITRAQSLVAVVGDPIAL :. .:. . :: :::. :::.: : .:.:.:::..:. .::.:. : KIAA16 RS------SQSFV----QL------DLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLL 920 930 940 950 1060 1070 1080 1090 1100 KIAA00 CSIGRCRKFWERFIALCHENSSLHGITF------EQIKAQLEALELKKTYVLNPLAPEFI :. :. :. .:.::.. : : .: . :..: . . .: . ... KIAA16 ---GH-DPDWKVFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPHSHDYL 960 970 980 990 1000 1010 1110 1120 1130 1140 1150 1160 KIAA00 PRALRLQHSGSTNKQQQSPPKGKSLHHTQNDHFQNDGIVQPNPSVLIGNPIRAYTPPPPL :. KIAA16 PQEREGEGGLSLQVEPEWRNEL 1020 1030 1943 residues in 1 query sequences 1985562 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:09 2008 done: Thu Dec 18 15:06:10 2008 Total Scan time: 0.970 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]