hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15583722/chunk_1/iprscan-20080501-15583722.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0050 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.ls Putative GTPase activating protein for Arf 230.6 3.2e-66 1 PF01412.9.fs Putative GTPase activating protein for Arf 228.7 1.2e-65 1 PF00169.19.fs PH domain 74.0 4.6e-22 1 PF00169.19.ls PH domain 76.0 1.1e-19 1 PF00023.20.fs Ankyrin repeat 54.7 2.9e-14 3 PF00023.20.ls Ankyrin repeat 53.1 8.5e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 322 416 .. 1 92 [] 74.0 4.6e-22 PF00169.19.ls 1/1 322 416 .. 1 92 [] 76.0 1.1e-19 PF01412.9.ls 1/1 461 583 .. 1 137 [] 230.6 3.2e-66 PF01412.9.fs 1/1 461 583 .. 1 137 [] 228.7 1.2e-65 PF00023.20.fs 1/3 662 694 .. 1 33 [] 24.4 7.9e-06 PF00023.20.ls 1/2 662 694 .. 1 33 [] 26.4 9.2e-05 PF00023.20.ls 2/2 695 727 .. 1 33 [] 26.7 7.7e-05 PF00023.20.fs 2/3 695 727 .. 1 33 [] 24.7 6.7e-06 PF00023.20.fs 3/3 728 748 .. 1 21 [. 5.6 1.4 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 322 to 416: score 74.0, E = 4.6e-22 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs +++eG+L+k+ ++++k+w +R+f++++++L+y k+ k ++ ++ KIAA0050 322 LVMEGHLFKRAsnAFKTWSRRWFTIQSNQLVYQKKY--KDPVTVVVD 366 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai ++++++v+ ++++r++cFe++++++ + llqa+se ++ Wv+a qs+i KIAA0050 367 DLRLCTVKLCpdsERRFCFEVVStSK-SCLLQADSERLLQLWVSAVQSSI 415 r<-* + KIAA0050 416 A 416 PF00169.19.ls: domain 1 of 1, from 322 to 416: score 76.0, E = 1.1e-19 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs +++eG+L+k+ ++++k+w +R+f++++++L+y k+ k ++ ++ KIAA0050 322 LVMEGHLFKRAsnAFKTWSRRWFTIQSNQLVYQKKY--KDPVTVVVD 366 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai ++++++v+ ++++r++cFe++++++ + llqa+se ++ Wv+a qs+i KIAA0050 367 DLRLCTVKLCpdsERRFCFEVVStSK-SCLLQADSERLLQLWVSAVQSSI 415 r<-* + KIAA0050 416 A 416 PF01412.9.ls: domain 1 of 1, from 461 to 583: score 230.6, E = 3.2e-66 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v ++++s d gN++C+DC p P+WaS+nlGv+lCi+CSGiHR+ KIAA0050 461 GHVVAQVQSVD-GNAQCCDCRE-PAPEWASINLGVTLCIQCSGIHRS 505 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH+SkV RSltLDsW+p el+kl+ c++GN+ +n+++E++++++++ KIAA0050 506 L-GVHFSKV--RSLTLDSWEP-ELVKLM-CELGNVIINQIYEARVEAMAV 550 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* k++++++ +rq++e++i+aKY+ek+f+ k++ ++ KIAA0050 551 KKPGPSC-------SRQEKEAWIHAKYVEKKFLTKLPEIR 583 PF01412.9.fs: domain 1 of 1, from 461 to 583: score 228.7, E = 1.2e-65 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v ++++s d gN++C+DC p P+WaS+nlGv+lCi+CSGiHR+ KIAA0050 461 GHVVAQVQSVD-GNAQCCDCRE-PAPEWASINLGVTLCIQCSGIHRS 505 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH+SkV RSltLDsW+p el+kl+ c++GN+ +n+++E++++++++ KIAA0050 506 L-GVHFSKV--RSLTLDSWEP-ELVKLM-CELGNVIINQIYEARVEAMAV 550 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* k++++++ +rq++e++i+aKY+ek+f+ k++ ++ KIAA0050 551 KKPGPSC-------SRQEKEAWIHAKYVEKKFLTKLPEIR 583 PF00023.20.fs: domain 1 of 3, from 662 to 694: score 24.4, E = 7.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPL A ++l +++Ll++GA++n d KIAA0050 662 DNATPLIQATAANSLLACEFLLQNGANVNQADS 694 PF00023.20.ls: domain 1 of 2, from 662 to 694: score 26.4, E = 9.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPL A ++l +++Ll++GA++n d KIAA0050 662 DNATPLIQATAANSLLACEFLLQNGANVNQADS 694 PF00023.20.ls: domain 2 of 2, from 695 to 727: score 26.7, E = 7.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A + g++ ++ l+l++GAdl a+d KIAA0050 695 AGRGPLHHATILGHTGLACLFLKRGADLGARDS 727 PF00023.20.fs: domain 2 of 3, from 695 to 727: score 24.7, E = 6.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A + g++ ++ l+l++GAdl a+d KIAA0050 695 AGRGPLHHATILGHTGLACLFLKRGADLGARDS 727 PF00023.20.fs: domain 3 of 3, from 728 to 748: score 5.6, E = 1.4 *->dGfTPLHlAalrgnlevvklL<-* +G+ PL +A + n+++v+lL KIAA0050 728 EGRDPLTIAMETANADIVTLL 748 //