hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15551349/chunk_1/iprscan-20080501-15551349.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0048 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 77.3 1.9e-18 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/3 539 563 .. 1 23 [] 25.8 0.0059 SM00355 2/3 569 593 .. 1 23 [] 28.4 0.00096 SM00355 3/3 599 621 .. 1 23 [] 23.0 0.04 Alignments of top-scoring domains: SM00355: domain 1 of 3, from 539 to 563: score 25.8, E = 0.0059 *->ykCpi.gCgksfssk.aLkrHmrvH<-* ++C+i++Cgk+f+ + L+ H+r H KIAA0048 539 HVCHIpDCGKTFRKTsLLRAHVRLH 563 SM00355: domain 2 of 3, from 569 to 593: score 28.4, E = 0.00096 *->ykCpi.gCgksfssk.aLkrHmrvH<-* ++C++ Cgk+f++ ++L+rH r+H KIAA0048 569 FVCNWfFCGKRFTRSdELQRHARTH 593 SM00355: domain 3 of 3, from 599 to 621: score 23.0, E = 0.04 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C+k+f + ++L++H+++H KIAA0048 599 FECAQ-CQKRFMRSdHLTKHYKTH 621 //