hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15515509/chunk_1/iprscan-20080501-15515509.nocrc
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Query sequence: KIAA0046
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00116                                                  81.7    8.8e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00116    1/2     611   660 ..     1    47 []    27.2   0.0022
SM00116    2/2     813   861 ..     1    47 []    54.5  1.4e-11

Alignments of top-scoring domains:
SM00116: domain 1 of 2, from 611 to 660: score 27.2, E = 0.0022
                   *->dvvtvspdttleealelmrehgirrlPVVd...gkLvGIvtrrDilk
                      ++++v+p+t+++  ++++r++ ++++PVV +++g+ + +    ++++
    KIAA0046   611    NLTYVYPHTRIQSLVSILRTTVHHAFPVVTenrGNEKEFMKGNQLIS 657  

                   ala<-*
                   +     
    KIAA0046   658 NNI    660  

SM00116: domain 2 of 2, from 813 to 861: score 54.5, E = 1.4e-11
                   *->dvvtvspdttleealelmrehgirrlPVVd..gkLvGIvtrrDilka
                       ++tvsp+t +  +++l+r+ g+r+lPVV+  g++vGI+tr  + + 
    KIAA0046   813    SPFTVSPNTHVSQVFNLFRTMGLRHLPVVNavGEIVGIITRHNLTYE 859  

                   la<-*
                   ++   
    KIAA0046   860 FL    861  

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