hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15515509/chunk_1/iprscan-20080501-15515509.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0046 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00654.10.fs Voltage gated chloride channel 673.2 2.5e-204 1 PF00654.10.ls Voltage gated chloride channel 675.2 4.7e-200 1 PF00571.18.fs CBS domain pair 66.3 1.6e-17 2 PF00571.18.ls CBS domain pair 60.2 6.2e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00654.10.fs 1/1 139 575 .. 1 455 [] 673.2 2.5e-204 PF00654.10.ls 1/1 139 575 .. 1 455 [] 675.2 4.7e-200 PF00571.18.ls 1/1 606 861 .. 1 114 [] 60.2 6.2e-15 PF00571.18.fs 2/2 790 861 .. 44 114 .] 51.9 1.4e-13 Alignments of top-scoring domains: PF00654.10.fs: domain 1 of 1, from 139 to 575: score 673.2, E = 2.5e-204 *->fslvlvllaalLvkkfaPaAaGSGIPEiKtiLnGikivdgkgylrlr f+l +v+la+lLv ++P AaGSGIPE+K++LnG+k+ +g++rlr KIAA0046 139 FNLTFVFLASLLVL-IEPVAAGSGIPEVKCYLNGVKV---PGIVRLR 181 tllvKvvGlalsvgsGLslGKEGPfVHiGaciaalLskggStslrlqfsl tll+Kv+G+++sv++GL++GKEGP++H+G++++a+L +++S+slr++++ KIAA0046 182 TLLCKVLGVLFSVAGGLFVGKEGPMIHSGSVVGAGLPQFQSISLRKIQFN 231 fkyseedrRkdrRdLlaaGaAaGvAaAFgAPiGGVLFslEievssenarf f+y+++dr d+Rd+++aGaAaGvAaAFgAPiGG LFslE e+ss ++ KIAA0046 232 FPYFRSDR--DKRDFVSAGAAAGVAAAFGAPIGGTLFSLE-EGSS---FW 275 nvkllwrsLFFasavaafvlrlinsffvsgkcgdFg.tglalFdvsfrtd n++l+w++ +F+s++a+f+l++++s ++g++g+F+ +gl +F+ ++++d KIAA0046 276 NQGLTWKV-LFCSMSATFTLNFFRSGIQFGSWGSFQlPGLLNFGEFKCSD 324 r....fpwtlfElplFillGifgGllGalFnrlnrkilkfrkKnrylskk ++++ ++wt+++l +F+++G++gGllGa+Fn+ln +++k+r+ r +++k KIAA0046 325 SdkkcHLWTAMDLGFFVVMGVIGGLLGATFNCLNKRLAKYRM--RNVHPK 372 lkkppvlevalvglltavlsfplplllgcagglelvee............ +k+++vle++lv+l+t v++f+++++lg + ++ ++++ ++++ + + KIAA0046 373 PKLVRVLESLLVSLVTTVVVFVASMVLG--ECRQMSSSsqigndsfqlqv 420 ...rtlnilfdnCtwgeyndlasllcntpedavlslFhwnipgegdffaf +++++++i++++C++++ynd+a+l++n++e+a+l+lFh+++ f+++ KIAA0046 421 tedVNSSIKTFFCPNDTYNDMATLFFNPQESAILQLFHQDG----TFSPV 466 tlLlllliakflltlltfGigvPgGlFvPslaiGAalGrlvGifverlim +L l+++++fll+++t+Gi+vP+GlFvPsl++GAa+Grlv+++++++i KIAA0046 467 -TLALFFVLYFLLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYI- 514 avlsHdwfpfgifcegfpdcilePGlYAvlGAAAflGGvvrmTvslaVIm g+ + ++ G++A++GAAAflGGvvrmT+sl+VI+ KIAA0046 515 ---------------GLGHIYS--GTFALIGAAAFLGGVVRMTISLTVIL 547 fElTGnlsvilPlMvAvliaklvadslg<-* +E T+ ++++lP+Mv++++ak+++d+++ KIAA0046 548 IESTNEITYGLPIMVTLMVAKWTGDFFN 575 PF00654.10.ls: domain 1 of 1, from 139 to 575: score 675.2, E = 4.7e-200 *->fslvlvllaalLvkkfaPaAaGSGIPEiKtiLnGikivdgkgylrlr f+l +v+la+lLv ++P AaGSGIPE+K++LnG+k+ +g++rlr KIAA0046 139 FNLTFVFLASLLVL-IEPVAAGSGIPEVKCYLNGVKV---PGIVRLR 181 tllvKvvGlalsvgsGLslGKEGPfVHiGaciaalLskggStslrlqfsl tll+Kv+G+++sv++GL++GKEGP++H+G++++a+L +++S+slr++++ KIAA0046 182 TLLCKVLGVLFSVAGGLFVGKEGPMIHSGSVVGAGLPQFQSISLRKIQFN 231 fkyseedrRkdrRdLlaaGaAaGvAaAFgAPiGGVLFslEievssenarf f+y+++dr d+Rd+++aGaAaGvAaAFgAPiGG LFslE e+ss ++ KIAA0046 232 FPYFRSDR--DKRDFVSAGAAAGVAAAFGAPIGGTLFSLE-EGSS---FW 275 nvkllwrsLFFasavaafvlrlinsffvsgkcgdFg.tglalFdvsfrtd n++l+w++ +F+s++a+f+l++++s ++g++g+F+ +gl +F+ ++++d KIAA0046 276 NQGLTWKV-LFCSMSATFTLNFFRSGIQFGSWGSFQlPGLLNFGEFKCSD 324 r....fpwtlfElplFillGifgGllGalFnrlnrkilkfrkKnrylskk ++++ ++wt+++l +F+++G++gGllGa+Fn+ln +++k+r+ r +++k KIAA0046 325 SdkkcHLWTAMDLGFFVVMGVIGGLLGATFNCLNKRLAKYRM--RNVHPK 372 lkkppvlevalvglltavlsfplplllgcagglelvee............ +k+++vle++lv+l+t v++f+++++lg + ++ ++++ ++++ + + KIAA0046 373 PKLVRVLESLLVSLVTTVVVFVASMVLG--ECRQMSSSsqigndsfqlqv 420 ...rtlnilfdnCtwgeyndlasllcntpedavlslFhwnipgegdffaf +++++++i++++C++++ynd+a+l++n++e+a+l+lFh+++ f+++ KIAA0046 421 tedVNSSIKTFFCPNDTYNDMATLFFNPQESAILQLFHQDG----TFSPV 466 tlLlllliakflltlltfGigvPgGlFvPslaiGAalGrlvGifverlim +L l+++++fll+++t+Gi+vP+GlFvPsl++GAa+Grlv+++++++i KIAA0046 467 -TLALFFVLYFLLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYI- 514 avlsHdwfpfgifcegfpdcilePGlYAvlGAAAflGGvvrmTvslaVIm g+ + ++ G++A++GAAAflGGvvrmT+sl+VI+ KIAA0046 515 ---------------GLGHIYS--GTFALIGAAAFLGGVVRMTISLTVIL 547 fElTGnlsvilPlMvAvliaklvadslg<-* +E T+ ++++lP+Mv++++ak+++d+++ KIAA0046 548 IESTNEITYGLPIMVTLMVAKWTGDFFN 575 PF00571.18.ls: domain 1 of 1, from 606 to 861: score 60.2, E = 6.2e-15 RF xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxxxx *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvd.edgklvGivt d+m +++ +v+p +t ++ + ++r + ++++PVv ++ g+ KIAA0046 606 DIMEPNLTYVYP-HTRIqSLVSILRTTVHHAFPVVTeNRGN------ 645 RF xxxxxxxxx erDlllral......................................... e++ +++ +++ + ++++ ++ ++ ++++ + ++ ++++ ++ + KIAA0046 646 EKE-FMKGNqlisnnikfkkssiltrageqrkrsqsmksypsselrnmcd 694 RF .................................................. ++ ++++ ++++ +++ ++ ++ ++ +++++ + +++ ++ + KIAA0046 695 ehiaseepaekedllqqmlerrytpypnlypdqspsedwtmeerfrpltf 744 RF .................................................. ++ ++ + ++ +++ ++ + ++ + + ++ ++ ++ ++ + KIAA0046 745 hglilrsqlvtllvrgvcysesqssasqprlsyaemaedyprypdihdld 794 RF xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx .........tpvsdiMtrpPvitvppdtsl.ealelmlehgirhrrlpVv + +++ ++v +M+++P +tv+p+t +++++ l++ g+r + lpVv KIAA0046 795 ltllnprmiVDVTPYMNPSP-FTVSPNTHVsQVFNLFRTMGLR-H-LPVV 841 RF xxxxxxxxxxxxxxxxxxxx DedgklvGivtreDilrala<-* + g++vGi+tr+++ +++ KIAA0046 842 NAVGEIVGIITRHNLTYEFL 861 PF00571.18.fs: domain 2 of 2, from 790 to 861: score 51.9, E = 1.4e-13 RF xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx xxxxxxxxx *->vterDlllral.....tpvsdiMtrpPvitvppdtsl.ealelmleh +++ D l l+++ ++v +M+++P +tv+p+t +++++ l++ KIAA0046 790 IHDLD-LTL-LnprmiVDVTPYMNPSP-FTVSPNTHVsQVFNLFRTM 833 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx girhrrlpVvDedgklvGivtreDilrala<-* g+r + lpVv+ g++vGi+tr+++ +++ KIAA0046 834 GLR-H-LPVVNAVGEIVGIITRHNLTYEFL 861 //