hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15483668/chunk_1/iprscan-20080501-15483668.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0044 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01603.10.ls Protein phosphatase 2A regulatory B subunit 1099.2 0 1 PF01603.10.fs Protein phosphatase 2A regulatory B subunit 1097.1 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01603.10.fs 1/1 25 437 .. 1 412 [] 1097.1 0 PF01603.10.ls 1/1 25 437 .. 1 412 [] 1099.2 0 Alignments of top-scoring domains: PF01603.10.fs: domain 1 of 1, from 25 to 437: score 1097.1, E = 0 *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFt.DPlkdlkeKEiKRqt L ++Dvp +e Lfi+KL+qCcv+FDF++DPl+dlk KE+KR++ KIAA0044 25 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVsDPLSDLKWKEVKRAA 71 LlELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeE L E+v+y+t++r ++tE++ype+v+M++vN FRtLpPssn++++efDpeE KIAA0044 72 LSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEE 121 DEPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFD DEPtLE+AWPHLQlVYE+FLRFleSPdf++++AK+YiDqkFvl+LL+LFD KIAA0044 122 DEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFD 171 SEDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIA SEDPRERdfLKT+LHRIYGKFL+lRa+IRKqiNNIFyrFiYEtE+hnGIA KIAA0044 172 SEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA 221 ELLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiV ELLEILGSIINGFALPLKeEHKiFL++VL+PLHk+Ksls+YH+QLaYC+V KIAA0044 222 ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVV 271 QFvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqK QF+EKD++Lte+V+ +LLKyWPkt+S+KEVmFL+ElEEIL+vieP+EF+K KIAA0044 272 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 321 imvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFP im+PLFrQ+A+CvsS+HFQVAERALy+WNNeyi+sLI++N++ ILPI+FP KIAA0044 322 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 371 aLernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekek +L+rnsk+HWN+tih+L+yN+lKlFmEm+qkLFd+ct+++k+++ kek k KIAA0044 372 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLK 421 eekReelWkkLEelas<-* +++Ree W k+E+la+ KIAA0044 422 MKEREEAWVKIENLAK 437 PF01603.10.ls: domain 1 of 1, from 25 to 437: score 1099.2, E = 0 *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFt.DPlkdlkeKEiKRqt L ++Dvp +e Lfi+KL+qCcv+FDF++DPl+dlk KE+KR++ KIAA0044 25 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVsDPLSDLKWKEVKRAA 71 LlELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeE L E+v+y+t++r ++tE++ype+v+M++vN FRtLpPssn++++efDpeE KIAA0044 72 LSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEE 121 DEPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFD DEPtLE+AWPHLQlVYE+FLRFleSPdf++++AK+YiDqkFvl+LL+LFD KIAA0044 122 DEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFD 171 SEDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIA SEDPRERdfLKT+LHRIYGKFL+lRa+IRKqiNNIFyrFiYEtE+hnGIA KIAA0044 172 SEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA 221 ELLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiV ELLEILGSIINGFALPLKeEHKiFL++VL+PLHk+Ksls+YH+QLaYC+V KIAA0044 222 ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVV 271 QFvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqK QF+EKD++Lte+V+ +LLKyWPkt+S+KEVmFL+ElEEIL+vieP+EF+K KIAA0044 272 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 321 imvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFP im+PLFrQ+A+CvsS+HFQVAERALy+WNNeyi+sLI++N++ ILPI+FP KIAA0044 322 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 371 aLernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekek +L+rnsk+HWN+tih+L+yN+lKlFmEm+qkLFd+ct+++k+++ kek k KIAA0044 372 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLK 421 eekReelWkkLEelas<-* +++Ree W k+E+la+ KIAA0044 422 MKEREEAWVKIENLAK 437 //