# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02085.fasta.huge -Q ../query/KIAA0036.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0036, 632 aa
 vs ./tmplib.23147 library

1986873 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.8642+/-0.00507; mu= 3.1839+/- 0.341
 mean_var=160.0820+/-39.839, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.101369

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1119  ( 1854 res)   hf00569y1                  (1854)  199 42.1 0.00051


>>KIAA1119  ( 1854 res)   hf00569y1                       (1854 aa)
 initn: 145 init1:  78 opt: 199  Z-score: 163.9  bits: 42.1 E(): 0.00051
Smith-Waterman score: 199;  23.830% identity (57.872% similar) in 235 aa overlap (321-544:762-993)

              300       310       320       330       340       350
KIAA00 LRRLLSKQETGTEFSQELRQLVGLLSPMVYQEVEEQKLHQAACLIQAYWKGFQTRKRLKK
                                     .... .:.. :. .::   .:.  . . ..
KIAA11 SVLENLIKDPDKFQFGRTKIFFRAGQVAYLEKLRADKFRTATIMIQKTVRGWLQKVKYHR
             740       750       760       770       780       790 

              360       370        380       390        400        
KIAA00 LPSAVIALQRSFRSKRSKMLLE-INRQKEEEDLKLQLQLQRQR-AMRLSRELQLSMLEIV
       : .:...:::  :.. .. : : . : .    :. . ..:: : :..  :.  . .  ..
KIAA11 LKGATLTLQRYCRGHLARRLAEHLRRIRAAVVLQKHYRMQRARQAYQRVRRAAVVIQAFT
             800       810       820       830       840       850 

      410        420       430       440       450       460       
KIAA00 HPGQVEKHYRE-MEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAAVTLQRAALKFLAK
       .   :.. ::. . :..:  :::: ::.  :..:.. :.. :  . :  . .:  . :  
KIAA11 RAMFVRRTYRQVLMEHKATTIQKHVRGWMARRHFQRLRDAAIVIQCAFRMLKAR-RELKA
             860       870       880       890       900        910

       470       480       490       500         510       520     
KIAA00 CRKKKKLFAPWRGLQELTDARRVELKKRVDDYVR--RHLGSPMSDVVSRELHAQAQERLQ
        : . .     . :.   . . :.:....:.  .  . :.  .:  :.   ...  :::.
KIAA11 LRIEARSAEHLKRLNVGMENKVVQLQRKIDEQNKEFKTLSEQLS--VTTSTYTMEVERLK
              920       930       940       950         960        

               530       540       550       560       570         
KIAA00 ----HYFM--GRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLSRSRPV
           :: .  :.    : :.. :.:                                   
KIAA11 KELVHYQQSPGEDTSLRLQEEVESLRTELQRAHSERKILEDAHSREKDELRKRVADLEQE
      970       980       990      1000      1010      1020        




632 residues in 1 query   sequences
1986873 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:28 2008 done: Thu Dec 18 15:05:29 2008
 Total Scan time:  0.520 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]