hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15332411/chunk_1/iprscan-20080501-15332411.nocrc
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Query sequence: KIAA0035
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF05022.3.fs   SRP40, C-terminal domain                 210.9    5.7e-69   1
PF05022.3.ls   SRP40, C-terminal domain                 212.9    6.8e-61   1
PF01347.12.fs  Lipoprotein amino terminal region         15.9    3.9e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05022.3.fs   1/1     609   704 ..     1    99 []   210.9  5.7e-69
PF05022.3.ls   1/1     609   704 ..     1    99 []   212.9  6.8e-61

Alignments of top-scoring domains:
PF05022.3.fs: domain 1 of 1, from 609 to 704: score 210.9, E = 5.7e-69
                   *->kkskskstntepakvdknskrkkkPFrRVdeekqiifvserlrDNsf
                      kk k++++nt+p k++k++kr+++PFrRV+ee+  i+v++r++DNsf
    KIAA0035   609    KKIKLQTPNTFP-KRKKGEKRASSPFRRVREEE--IEVDSRVADNSF 652  

                   dskaGAegdWGekANevLgkvrGKdFRhEKTKKKRGSYRGGsInqevnSi
                   d+k+GA+gdWGe+AN+vL++++GK+FRhEKTKKKRGSYRGGsI+++vnSi
    KIAA0035   653 DAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSI 702  

                   KF<-*
                   KF   
    KIAA0035   703 KF    704  

PF05022.3.ls: domain 1 of 1, from 609 to 704: score 212.9, E = 6.8e-61
                   *->kkskskstntepakvdknskrkkkPFrRVdeekqiifvserlrDNsf
                      kk k++++nt+p k++k++kr+++PFrRV+ee+  i+v++r++DNsf
    KIAA0035   609    KKIKLQTPNTFP-KRKKGEKRASSPFRRVREEE--IEVDSRVADNSF 652  

                   dskaGAegdWGekANevLgkvrGKdFRhEKTKKKRGSYRGGsInqevnSi
                   d+k+GA+gdWGe+AN+vL++++GK+FRhEKTKKKRGSYRGGsI+++vnSi
    KIAA0035   653 DAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSI 702  

                   KF<-*
                   KF   
    KIAA0035   703 KF    704  

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