hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15300344/chunk_1/iprscan-20080501-15300344.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0033 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09335.1.fs SNARE associated Golgi protein 108.4 3e-30 1 PF09335.1.ls SNARE associated Golgi protein 110.4 4.8e-30 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09335.1.fs 1/1 173 294 .. 1 123 [] 108.4 3e-30 PF09335.1.ls 1/1 173 294 .. 1 123 [] 110.4 4.8e-30 Alignments of top-scoring domains: PF09335.1.fs: domain 1 of 1, from 173 to 294: score 108.4, E = 3e-30 *->lPgiGs.vltlaaGalFGpwlGfllsliGatlGatlaFllaRylgrd +Pg s +l+++ G+l+ + l ++l+++++ lGa+++++l+ ++gr+ KIAA0033 173 IPG--SiFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRP 217 wvekrlgknpklaaldrgleer...nGfkyvlllRLiPvfPfdlvNyaaG v k+l k ++++ +e r++++ y+++lR+ P++P++++N+ KIAA0033 218 VVYKYLTE--KAVKWSQQVE-RhreHLINYIIFLRITPFLPNWFINITSP 264 ltrisfrtFllatllGmlPgtlvyvylGss<-* + +++++ F+++t+lG +P +v + +G++ KIAA0033 265 VINVPLKVFFIGTFLGVAPPSFVAIKAGTT 294 PF09335.1.ls: domain 1 of 1, from 173 to 294: score 110.4, E = 4.8e-30 *->lPgiGs.vltlaaGalFGpwlGfllsliGatlGatlaFllaRylgrd +Pg s +l+++ G+l+ + l ++l+++++ lGa+++++l+ ++gr+ KIAA0033 173 IPG--SiFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRP 217 wvekrlgknpklaaldrgleer...nGfkyvlllRLiPvfPfdlvNyaaG v k+l k ++++ +e r++++ y+++lR+ P++P++++N+ KIAA0033 218 VVYKYLTE--KAVKWSQQVE-RhreHLINYIIFLRITPFLPNWFINITSP 264 ltrisfrtFllatllGmlPgtlvyvylGss<-* + +++++ F+++t+lG +P +v + +G++ KIAA0033 265 VINVPLKVFFIGTFLGVAPPSFVAIKAGTT 294 //