# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01047.fasta.huge -Q ../query/KIAA0031.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0031, 977 aa
 vs ./tmplib.23147 library

1986528 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0260+/-0.00537; mu= 15.3704+/- 0.365
 mean_var=101.2112+/-23.625, 0's: 0 Z-trim: 4  B-trim: 3 in 1/39
 Lambda= 0.127485

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0741  ( 1222 res)   hk04024                    (1222)  153 39.8  0.0026


>>KIAA0741  ( 1222 res)   hk04024                         (1222 aa)
 initn: 161 init1: 121 opt: 153  Z-score: 151.3  bits: 39.8 E(): 0.0026
Smith-Waterman score: 178;  24.101% identity (50.000% similar) in 278 aa overlap (20-284:533-779)

                          10        20        30        40         
KIAA00            AGESIMDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDD
                                     :: . .:...:   : .. .: .. ... .
KIAA07 AGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGS
            510       520       530       540       550       560  

      50        60          70        80        90       100       
KIAA00 VGDHDDDHPGMEVVLHE--DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKF
        ::..:.. . :    .  :::  :. :     : ..   ..:     .   :  .  . 
KIAA07 EGDEEDEKVSDEKDSGKTLDKK--PSKEMSSDSEYDS---DDDRTKEERAYDKAKRRIEK
            570       580         590          600       610       

       110       120       130       140         150       160     
KIAA00 TLMEQTLPVTVYEMDFLADLMDNSELIRNVTLC--GHLHHGKTCFVDCLIEQTHPEIRKR
         .:..  :             :.: .:   .:  ::.  ::: ..:        ..:. 
KIAA07 RRLEHSKNV-------------NTEKLRAPIICVLGHVDTGKTKILD--------KLRHT
       620                    630       640       650              

         170       180       190       200                210      
KIAA00 YDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKG-KSYLFN--------IMDTPGHVNF
       . ::     :  :.:   .:  ..:. ..  .::  :..  .        :.::::: .:
KIAA07 HVQDGEAGGI--TQQ---IGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTPGHESF
        660            670       680       690       700       710 

        220       230       240       250       260       270      
KIAA00 SDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPP
       :.  . :  . : ..: .:  .:.  .: . :.   ...    : .::::::    : : 
KIAA07 SNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKIDRLYDWKKSPD
             720       730       740       750       760       770 

        280       290       300       310       320       330      
KIAA00 TDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF
       .:.   :.                                                    
KIAA07 SDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGD
             780       790       800       810       820       830 




977 residues in 1 query   sequences
1986528 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:17 2008 done: Thu Dec 18 15:05:18 2008
 Total Scan time:  0.640 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]