hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15245525/chunk_1/iprscan-20080501-15245525.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0030 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00493.13.ls MCM2/3/5 family 734.1 8.5e-218 1 PF00493.13.fs MCM2/3/5 family 732.1 3.4e-217 1 PF01078.11.ls Magnesium chelatase, subunit ChlI -114.9 3.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00493.13.fs 1/1 470 813 .. 1 374 [] 732.1 3.4e-217 PF00493.13.ls 1/1 470 813 .. 1 374 [] 734.1 8.5e-218 PF01078.11.ls 1/1 494 685 .. 1 209 [] -114.9 3.1e-05 Alignments of top-scoring domains: PF00493.13.fs: domain 1 of 1, from 470 to 813: score 732.1, E = 3.4e-217 *->deeeirelakdpdiyeklarSIAPsIyGhedvKkAilLqLFGGvrKn d+++i l+kd i ek+ +SIAPsIyGhed+K++++L+LFGG +Kn KIAA0030 470 DVKMITSLSKDQQIGEKIFASIAPSIYGHEDIKRGLALALFGGEPKN 516 lpdgtrlRGDINvLLvGDPGkTAKSQLLKyveklaPRaVYTsGkGSSAaG ++++++RGDINvLL+GDPG TAKSQ+LKy+ek++ Ra++T+G+G+SA+G KIAA0030 517 PGGKHKVRGDINVLLCGDPG-TAKSQFLKYIEKVSSRAIFTTGQGASAVG 565 LTAaVvrDpetgEwtLEaGALVLADgGvCCIDEFDKMdesDRvAIHEAME LTA+V+r+p+++EwtLEaGALVLAD GvC+IDEFDKM+++DR++IHEAME KIAA0030 566 LTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME 615 QQTISIAKAGIvatLNARtSvLAAANPigGRYdpsktlaeNInLpppLLS QQ+ISI+KAGIv++L+AR++v+AAANPigGRYdps+t++eN++L++p++S KIAA0030 616 QQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 665 RFDLiFvllDkpdeekDerLAeHivslHrkgep.eqedee.g.gllvagd RFD+++v++D++d+++De+LA+++v++H +++p+++e+e +g KIAA0030 666 RFDILCVVRDTVDPVQDEMLARFVVGSHVRHHPsNKEEEGlAnG------ 709 eksveesvetepyveDllskrdntledkeidgeidpelLrkYIaYARenv +++e+++ + +ve ++++e L+kYI YA+e+v KIAA0030 710 -SAAEPAMPNTYGVE-----------------PLPQEVLKKYIIYAKERV 741 kPkLseeAsekLvdaYvelRkegeqEsl.tgsssrssipITvRQLESlIR +PkL +++ +k + Y +lRk Es+ tgs ipITvR++ES+IR KIAA0030 742 HPKLNQMDQDKVAKMYSDLRK----ESMaTGS-----IPITVRHIESMIR 782 LSEAhAklrLseiVteeDVeeAirLlkeSlk<-* ++EAhA+++L+++V e+DV++Air+++eS++ KIAA0030 783 MAEAHARIHLRDYVIEDDVNMAIRVMLESFI 813 PF00493.13.ls: domain 1 of 1, from 470 to 813: score 734.1, E = 8.5e-218 *->deeeirelakdpdiyeklarSIAPsIyGhedvKkAilLqLFGGvrKn d+++i l+kd i ek+ +SIAPsIyGhed+K++++L+LFGG +Kn KIAA0030 470 DVKMITSLSKDQQIGEKIFASIAPSIYGHEDIKRGLALALFGGEPKN 516 lpdgtrlRGDINvLLvGDPGkTAKSQLLKyveklaPRaVYTsGkGSSAaG ++++++RGDINvLL+GDPG TAKSQ+LKy+ek++ Ra++T+G+G+SA+G KIAA0030 517 PGGKHKVRGDINVLLCGDPG-TAKSQFLKYIEKVSSRAIFTTGQGASAVG 565 LTAaVvrDpetgEwtLEaGALVLADgGvCCIDEFDKMdesDRvAIHEAME LTA+V+r+p+++EwtLEaGALVLAD GvC+IDEFDKM+++DR++IHEAME KIAA0030 566 LTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME 615 QQTISIAKAGIvatLNARtSvLAAANPigGRYdpsktlaeNInLpppLLS QQ+ISI+KAGIv++L+AR++v+AAANPigGRYdps+t++eN++L++p++S KIAA0030 616 QQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 665 RFDLiFvllDkpdeekDerLAeHivslHrkgep.eqedee.g.gllvagd RFD+++v++D++d+++De+LA+++v++H +++p+++e+e +g KIAA0030 666 RFDILCVVRDTVDPVQDEMLARFVVGSHVRHHPsNKEEEGlAnG------ 709 eksveesvetepyveDllskrdntledkeidgeidpelLrkYIaYARenv +++e+++ + +ve ++++e L+kYI YA+e+v KIAA0030 710 -SAAEPAMPNTYGVE-----------------PLPQEVLKKYIIYAKERV 741 kPkLseeAsekLvdaYvelRkegeqEsl.tgsssrssipITvRQLESlIR +PkL +++ +k + Y +lRk Es+ tgs ipITvR++ES+IR KIAA0030 742 HPKLNQMDQDKVAKMYSDLRK----ESMaTGS-----IPITVRHIESMIR 782 LSEAhAklrLseiVteeDVeeAirLlkeSlk<-* ++EAhA+++L+++V e+DV++Air+++eS++ KIAA0030 783 MAEAHARIHLRDYVIEDDVNMAIRVMLESFI 813 PF01078.11.ls: domain 1 of 1, from 494 to 685: score -114.9, E = 3.1e-05 *->DlaDVkGQeqAKRALEIAAAGg........H......NLLmiGPPGs + G+e KR L A Gg++++++++H+ +++ N+L++G PG+ KIAA0030 494 ---SIYGHEDIKRGLALALFGGepknpggkHkvrgdiNVLLCGDPGT 537 GKtMLAkRLpgILPPLseeEaLEvtaihSvaGllggdgglirrRPFRaPH K+ + L +I E + ai +G + ++ ++ KIAA0030 538 AKS---QFLKYI-------EKVSSRAIF-TTG---QGASAVGLTAYVQ-R 572 HsaSaaALvGGGsgiprPGEISLAHnGVLFLDElPEFsrrvLEsLRqPLE H +S+ G+ LA +GV DE+ + + s + +E KIAA0030 573 HPVSRE------W-TLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME 615 dGevtIsRaaakvtyPArFqLVAAmNPCPCGylgdpdkrCrCsprqirrY ++ Is a ++ Ar++ +AA+NP G + dp+ + + KIAA0030 616 QQSISISKAGIVTSLQARCTVIAAANP--IGGRYDPSLTFSENVD----- 658 lsrlSGPLLDRIDlqv....eVprlsaeeL<-* l +P+ R+D+ ++ V +++ e L KIAA0030 659 ---LTEPIISRFDILCvvrdTVDPVQDEML 685 //