hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15144130/chunk_1/iprscan-20080501-15144130.nocrc
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Query sequence: KIAA0025
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00240.13.fs Ubiquitin family                               55.8    4.4e-15   1
PF00240.13.ls Ubiquitin family                               57.7    3.4e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00240.13.fs   1/1      46   120 ..     1    78 []    55.8  4.4e-15
PF00240.13.ls   1/1      46   120 ..     1    78 []    57.7  3.4e-14

Alignments of top-scoring domains:
PF00240.13.fs: domain 1 of 1, from 46 to 120: score 55.8, E = 4.4e-15
                   *->KtldgkgfatdgstitlevdpsdTVlelKekIeekeg..ipvdqQrL
                      K ++++     +++ +l+ d+ ++V +lK++++    ++  ++ QrL
    KIAA0025    46    KSPNQR-----HRDLELSGDRGWSVGHLKAHLSRVYPerPRPEDQRL 87   

                   iysGkvLreDdrtLseYniqdgs.ftlhlvlrlr<-*
                   iysGk+L  D++ L+++  +++++++lhlv   +   
    KIAA0025    88 IYSGKLL-LDHQCLRDLLPKQEKrHVLHLVCNVK    120  

PF00240.13.ls: domain 1 of 1, from 46 to 120: score 57.7, E = 3.4e-14
                   *->KtldgkgfatdgstitlevdpsdTVlelKekIeekeg..ipvdqQrL
                      K ++++     +++ +l+ d+ ++V +lK++++    ++  ++ QrL
    KIAA0025    46    KSPNQR-----HRDLELSGDRGWSVGHLKAHLSRVYPerPRPEDQRL 87   

                   iysGkvLreDdrtLseYniqdgs.ftlhlvlrlr<-*
                   iysGk+L  D++ L+++  +++++++lhlv   +   
    KIAA0025    88 IYSGKLL-LDHQCLRDLLPKQEKrHVLHLVCNVK    120  

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