hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15060540/chunk_1/iprscan-20080501-15060540.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0020 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00025 132.2 5.6e-35 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00025 1/6 164 199 .. 1 39 [] 26.1 0.0049 SM00025 2/6 200 235 .. 1 39 [] 27.9 0.0014 SM00025 3/6 236 272 .. 1 39 [] 16.0 3.8 SM00025 4/6 349 384 .. 1 39 [] 26.6 0.0034 SM00025 5/6 385 421 .. 1 39 [] 12.6 11 SM00025 6/6 423 459 .. 1 39 [] 23.0 0.042 Alignments of top-scoring domains: SM00025: domain 1 of 6, from 164 to 199: score 26.1, E = 0.0049 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* +i+g++ +++ + ++rViQ+ +++++e+ q+++ ++ KIAA0020 164 LIQGKIKTIAFAHDSTRVIQCYIQYGNEE---QRKQAFE 199 SM00025: domain 2 of 6, from 200 to 235: score 27.9, E = 0.0014 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* e++++l+eLsk +y+ +++ k+l ++s++ q+ eii+ KIAA0020 200 ELRDDLVELSKAKYSRNIVKKFLMYGSKP---QIAEIIR 235 SM00025: domain 3 of 6, from 236 to 272: score 16.0, E = 3.8 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ++kgh+ ++ + ++ +++++ + e q++++++ KIAA0020 236 SFKGHVRKMLRHAEASAIVEYAYNDKAILE--QRNMLTE 272 SM00025: domain 4 of 6, from 349 to 384: score 26.6, E = 0.0034 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* +i++ +++L++ + G rV ++l+h++++ +++ i++ KIAA0020 349 AIREAVVYLAHTHDGARVAMHCLWHGTPK---DRKVIVK 384 SM00025: domain 5 of 6, from 385 to 421: score 12.6, E = 11 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ++k ++++ ++ qy+ V+ ++++ + + +++ii KIAA0020 385 TMKTYVEKVANGQYSHLVLLAAFDCIDDTK--LVKQIII 421 SM00025: domain 6 of 6, from 423 to 459: score 23.0, E = 0.042 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ei+ +l+++++d+yG V+ +ll ++++ + eii+ KIAA0020 423 EIISSLPSIVNDKYGRKVLLYLLSPRDPAH--TVREIIE 459 //