# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00489.fasta.nr -Q ../query/KIAA0016.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0016, 178 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827296 sequences Expectation_n fit: rho(ln(x))= 5.0906+/-0.000185; mu= 8.7627+/- 0.010 mean_var=68.7814+/-13.442, 0's: 34 Z-trim: 34 B-trim: 2093 in 1/65 Lambda= 0.154646 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|2498697|sp|Q15388.1|TOM20_HUMAN RecName: Full=M ( 145) 944 218.5 3.4e-55 gi|48145553|emb|CAG32999.1| TOMM20 [Homo sapiens] ( 145) 940 217.6 6.3e-55 gi|52783214|sp|Q9DCC8.1|TOM20_MOUSE RecName: Full= ( 145) 940 217.6 6.3e-55 gi|157928124|gb|ABW03358.1| translocase of outer m ( 145) 936 216.7 1.2e-54 gi|194206111|ref|XP_001491687.2| PREDICTED: simila ( 145) 936 216.7 1.2e-54 gi|717146|gb|AAB01506.1| rTOM20 [Rattus norvegicus ( 145) 931 215.6 2.5e-54 gi|1838935|dbj|BAA09714.1| mitochondrial precursor ( 145) 930 215.4 3e-54 gi|126306992|ref|XP_001368924.1| PREDICTED: simila ( 145) 928 214.9 4e-54 gi|76676674|ref|XP_870365.1| PREDICTED: similar to ( 145) 926 214.5 5.5e-54 gi|118088188|ref|XP_423972.2| PREDICTED: similar t ( 145) 923 213.8 8.8e-54 gi|109085461|ref|XP_001094304.1| PREDICTED: transl ( 145) 919 212.9 1.6e-53 gi|82235869|sp|Q6DFM9.1|TOM20_XENTR RecName: Full= ( 147) 874 202.9 1.7e-50 gi|82177282|sp|Q8AVY0.1|TOM20_XENLA RecName: Full= ( 147) 866 201.1 6e-50 gi|109019952|ref|XP_001102287.1| PREDICTED: transl ( 139) 862 200.2 1.1e-49 gi|82183200|sp|Q6DH66.1|TOM20_DANRE RecName: Full= ( 146) 843 196.0 2.1e-48 gi|209733208|gb|ACI67473.1| Mitochondrial import r ( 147) 839 195.1 3.9e-48 gi|37589685|gb|AAH59518.1| Translocase of outer mi ( 145) 838 194.8 4.5e-48 gi|221220972|gb|ACM09147.1| Mitochondrial import r ( 147) 830 193.1 1.6e-47 gi|221222082|gb|ACM09702.1| Mitochondrial import r ( 146) 819 190.6 8.5e-47 gi|109472052|ref|XP_578267.2| PREDICTED: similar t ( 164) 796 185.5 3.3e-45 gi|109473513|ref|XP_001058390.1| PREDICTED: simila ( 196) 796 185.6 3.8e-45 gi|47229028|emb|CAG09543.1| unnamed protein produc ( 145) 777 181.2 5.6e-44 gi|189539544|ref|XP_001923336.1| PREDICTED: simila ( 140) 765 178.5 3.5e-43 gi|47209106|emb|CAF90064.1| unnamed protein produc ( 135) 676 158.7 3.2e-37 gi|149638229|ref|XP_001512118.1| PREDICTED: simila ( 214) 665 156.4 2.5e-36 gi|197127493|gb|ACH43991.1| putative translocase o ( 124) 654 153.7 9e-36 gi|198416610|ref|XP_002128237.1| PREDICTED: simila ( 164) 630 148.5 4.6e-34 gi|159162790|pdb|1OM2|A Chain A, Solution Nmr Stru ( 95) 597 140.9 4.9e-32 gi|149271700|ref|XP_001475586.1| PREDICTED: simila ( 126) 597 141.0 6.2e-32 gi|210121487|gb|EEA69199.1| hypothetical protein B ( 140) 597 141.1 6.7e-32 gi|210095021|gb|EEA43192.1| hypothetical protein B ( 140) 596 140.8 7.8e-32 gi|91094041|ref|XP_968248.1| PREDICTED: similar to ( 151) 571 135.3 4e-30 gi|72006261|ref|XP_782504.1| PREDICTED: hypothetic ( 165) 571 135.3 4.2e-30 gi|15741057|gb|AAL05599.1| outer membrane receptor ( 90) 566 134.0 5.7e-30 gi|48141950|ref|XP_397284.1| PREDICTED: similar to ( 145) 566 134.2 8.3e-30 gi|213972549|ref|NP_001135431.1| translocase of ou ( 143) 560 132.8 2.1e-29 gi|212381672|gb|ACJ25169.1| translocase of outer m ( 146) 557 132.2 3.4e-29 gi|212512892|gb|EEB15569.1| mitochondrial import r ( 150) 541 128.6 4.1e-28 gi|156227845|gb|EDO48647.1| predicted protein [Nem ( 138) 539 128.1 5.2e-28 gi|193648040|ref|XP_001942651.1| PREDICTED: simila ( 171) 523 124.6 7.3e-27 gi|108876687|gb|EAT40912.1| mitochondrial import r ( 233) 518 123.6 2e-26 gi|157013062|gb|EAA00369.4| AGAP012339-PA [Anophel ( 153) 515 122.8 2.3e-26 gi|194117479|gb|EDW39522.1| GL11896 [Drosophila pe ( 166) 509 121.5 6.2e-26 gi|16769486|gb|AAL28962.1| LD34461p [Drosophila me ( 171) 509 121.5 6.4e-26 gi|126282486|ref|XP_001369122.1| PREDICTED: simila ( 151) 507 121.0 7.9e-26 gi|194186394|gb|EDX00006.1| GE23225 [Drosophila ya ( 168) 507 121.0 8.6e-26 gi|190655204|gb|EDV52447.1| GG16077 [Drosophila er ( 171) 507 121.0 8.7e-26 gi|194181630|gb|EDW95241.1| GE19643 [Drosophila ya ( 171) 507 121.0 8.7e-26 gi|221130202|ref|XP_002154736.1| PREDICTED: simila ( 159) 501 119.7 2.1e-25 gi|194161908|gb|EDW76809.1| GK18666 [Drosophila wi ( 165) 501 119.7 2.1e-25 >>gi|2498697|sp|Q15388.1|TOM20_HUMAN RecName: Full=Mitoc (145 aa) initn: 944 init1: 944 opt: 944 Z-score: 1147.1 bits: 218.5 E(): 3.4e-55 Smith-Waterman score: 944; 100.000% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::::::::: gi|249 MVGRNSAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|48145553|emb|CAG32999.1| TOMM20 [Homo sapiens] (145 aa) initn: 964 init1: 940 opt: 940 Z-score: 1142.3 bits: 217.6 E(): 6.3e-55 Smith-Waterman score: 940; 99.310% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::::::::: gi|481 MVGRNSAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|481 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVD 100 110 120 130 140 >>gi|52783214|sp|Q9DCC8.1|TOM20_MOUSE RecName: Full=Mito (145 aa) initn: 940 init1: 940 opt: 940 Z-score: 1142.3 bits: 217.6 E(): 6.3e-55 Smith-Waterman score: 940; 99.310% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::::::::: gi|527 MVGRNSAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|527 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|157928124|gb|ABW03358.1| translocase of outer mitoc (145 aa) initn: 936 init1: 936 opt: 936 Z-score: 1137.5 bits: 216.7 E(): 1.2e-54 Smith-Waterman score: 936; 99.310% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::.:::::: gi|157 MVGRNSAIAAGVCGALFIGYCIYIDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|194206111|ref|XP_001491687.2| PREDICTED: similar to (145 aa) initn: 936 init1: 936 opt: 936 Z-score: 1137.5 bits: 216.7 E(): 1.2e-54 Smith-Waterman score: 936; 99.310% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::::::::: gi|194 MVGRNSAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|194 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQAEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|717146|gb|AAB01506.1| rTOM20 [Rattus norvegicus] (145 aa) initn: 931 init1: 931 opt: 931 Z-score: 1131.5 bits: 215.6 E(): 2.5e-54 Smith-Waterman score: 931; 97.931% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::.:::::::::::::::::. gi|717 MVGRNSAIAAGLCGALFIGYCIYFDRKRRG 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|717 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|717 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|1838935|dbj|BAA09714.1| mitochondrial precursor rec (145 aa) initn: 930 init1: 930 opt: 930 Z-score: 1130.3 bits: 215.4 E(): 3e-54 Smith-Waterman score: 930; 97.931% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::::::::::::::::::::::::::::: gi|183 MVGRNSAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::.::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|183 DPNFKDRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|183 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLGEDDVE 100 110 120 130 140 >>gi|126306992|ref|XP_001368924.1| PREDICTED: similar to (145 aa) initn: 928 init1: 928 opt: 928 Z-score: 1127.8 bits: 214.9 E(): 4e-54 Smith-Waterman score: 928; 97.931% identity (100.000% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS ::::..:::::::::::::::::::::::: gi|126 MVGRSGAIAAGVCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|126 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSVQSLAEDDVE 100 110 120 130 140 >>gi|76676674|ref|XP_870365.1| PREDICTED: similar to Mit (145 aa) initn: 926 init1: 926 opt: 926 Z-score: 1125.4 bits: 214.5 E(): 5.5e-54 Smith-Waterman score: 926; 97.931% identity (99.310% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS ::::::::::::::.::::::::::::::: gi|766 MVGRNSAIAAGVCGVLFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|766 DPNFKNRLRERRKKQKLAKERAGLFKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 DHLTNGIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 100 110 120 130 140 >>gi|118088188|ref|XP_423972.2| PREDICTED: similar to mi (145 aa) initn: 923 init1: 923 opt: 923 Z-score: 1121.8 bits: 213.8 E(): 8.8e-54 Smith-Waterman score: 923; 97.241% identity (99.310% similar) in 145 aa overlap (34-178:1-145) 10 20 30 40 50 60 KIAA00 VSCADRSEGSWPTAPSRSLPPPSTLSVVEKMVGRNSAIAAGVCGALFIGYCIYFDRKRRS :::..::::::.:::::::::::::::::: gi|118 MVGKTSAIAAGLCGALFIGYCIYFDRKRRS 10 20 30 70 80 90 100 110 120 KIAA00 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 DPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGV 40 50 60 70 80 90 130 140 150 160 170 KIAA00 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|118 DHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQCLAEDDVE 100 110 120 130 140 178 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 14:41:53 2009 done: Tue Mar 3 14:48:13 2009 Total Scan time: 1202.190 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]