hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14574574/chunk_1/iprscan-20080501-14574574.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0015
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00481.12.ls Protein phosphatase 2C                         352.5   6.4e-103   1
PF00481.12.fs Protein phosphatase 2C                         350.7   2.3e-102   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00481.12.fs   1/1     181   432 ..     1   303 []   350.7 2.3e-102
PF00481.12.ls   1/1     181   432 ..     1   303 []   352.5 6.4e-103

Alignments of top-scoring domains:
PF00481.12.fs: domain 1 of 1, from 181 to 432: score 350.7, E = 2.3e-102
                   *->ldvgvsrmqgwrksmeDahialknlnsss..sgkdsisffavfDghg
                      + v+++++++ r++meD+h++l+++n+ ++ s+ +++++favfDghg
    KIAA0015   181    WLVSIHAIRNTRRKMEDRHVSLPSFNQLFglSDPVNRAYFAVFDGHG 227  

                   GsqaakyagkhlekaltilaerksfpegnpnEwklsdledalrksflead
                   G++aa+ya+ h++   t +a+++++p++         +e alr++f++  
    KIAA0015   228 GVDAARYAAVHVH---TNAARQPELPTD---------PEGALREAFRR-- 263  

                   tdeelrsaadsanhvltkedlssGsTAvvalirgqkklLyvANvGDSrav
                   td+++ +  ++++     e l+sG+T v+ali g +  L+vA++GDS+++
    KIAA0015   264 TDQMFLR--KAKR-----ERLQSGTTGVCALIAGAT--LHVAWLGDSQVI 304  

                   LcrngnaiklvtqLtedHkpsdedEkrRIeaaGGfvsrvsgngRvnGvfL
                   L ++g+++     L+e H+p+++dEk+RIea+GGfvs+++ ++RvnG+ L
    KIAA0015   305 LVQQGQVV----KLMEPHRPERQDEKARIEALGGFVSHMD-CWRVNGT-L 348  

                   avSRAfGDfelKpnvtlgpelslerGifseeqpVsaePdvtsstkitesk
                   avSRA+GD+++Kp                   +Vs e d   s+ +t s 
    KIAA0015   349 AVSRAIGDVFQKP-------------------YVSGEADAA-SRALTGS- 377  

                   DeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaaekLvdeAi
                   +++l+LAcDG++Dvv++qe+v++v+s+l+   +++gs +++ae+Lv  A+
    KIAA0015   378 EDYLLLACDGFFDVVPHQEVVGLVQSHLT---RQQGSGLRVAEELVAAAR 424  

                   argseDni<-*
                   +rgs+Dni   
    KIAA0015   425 ERGSHDNI    432  

PF00481.12.ls: domain 1 of 1, from 181 to 432: score 352.5, E = 6.4e-103
                   *->ldvgvsrmqgwrksmeDahialknlnsss..sgkdsisffavfDghg
                      + v+++++++ r++meD+h++l+++n+ ++ s+ +++++favfDghg
    KIAA0015   181    WLVSIHAIRNTRRKMEDRHVSLPSFNQLFglSDPVNRAYFAVFDGHG 227  

                   GsqaakyagkhlekaltilaerksfpegnpnEwklsdledalrksflead
                   G++aa+ya+ h++   t +a+++++p++         +e alr++f++  
    KIAA0015   228 GVDAARYAAVHVH---TNAARQPELPTD---------PEGALREAFRR-- 263  

                   tdeelrsaadsanhvltkedlssGsTAvvalirgqkklLyvANvGDSrav
                   td+++ +  ++++     e l+sG+T v+ali g +  L+vA++GDS+++
    KIAA0015   264 TDQMFLR--KAKR-----ERLQSGTTGVCALIAGAT--LHVAWLGDSQVI 304  

                   LcrngnaiklvtqLtedHkpsdedEkrRIeaaGGfvsrvsgngRvnGvfL
                   L ++g+++     L+e H+p+++dEk+RIea+GGfvs+++ ++RvnG+ L
    KIAA0015   305 LVQQGQVV----KLMEPHRPERQDEKARIEALGGFVSHMD-CWRVNGT-L 348  

                   avSRAfGDfelKpnvtlgpelslerGifseeqpVsaePdvtsstkitesk
                   avSRA+GD+++Kp                   +Vs e d   s+ +t s 
    KIAA0015   349 AVSRAIGDVFQKP-------------------YVSGEADAA-SRALTGS- 377  

                   DeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaaekLvdeAi
                   +++l+LAcDG++Dvv++qe+v++v+s+l+   +++gs +++ae+Lv  A+
    KIAA0015   378 EDYLLLACDGFFDVVPHQEVVGLVQSHLT---RQQGSGLRVAEELVAAAR 424  

                   argseDni<-*
                   +rgs+Dni   
    KIAA0015   425 ERGSHDNI    432  

//