hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080909/iprscan-20080909-09252279/chunk_1/iprscan-20080909-09252279.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0013 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 183.2 9e-54 1 PF00620.17.ls RhoGAP domain 185.1 1.5e-52 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00620.17.fs 1/1 129 275 .. 1 155 [] 183.2 9e-54 PF00620.17.ls 1/1 129 275 .. 1 155 [] 185.1 1.5e-52 Alignments of top-scoring domains: PF00620.17.fs: domain 1 of 1, from 129 to 275: score 183.2, E = 9e-54 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P ++++ + le + ++tEG++R+sGs+ r+k+L+++ d+ge KIAA0013 129 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG---- 170 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +l+ + ++A+lLK+F+ReLPeP+l+ +l+e++++ a+++ +ee +a KIAA0013 171 CLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLK-AQQLGTEEKN-KA 218 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +l ++L ++ ++Lry + +L++V+ +s++NkM+++NLA++F+P+Ll+ KIAA0013 219 TLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 268 ppdgdsad<-* +++g + KIAA0013 269 TSEG-HEK 275 PF00620.17.ls: domain 1 of 1, from 129 to 275: score 185.1, E = 1.5e-52 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P ++++ + le + ++tEG++R+sGs+ r+k+L+++ d+ge KIAA0013 129 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG---- 170 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +l+ + ++A+lLK+F+ReLPeP+l+ +l+e++++ a+++ +ee +a KIAA0013 171 CLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLK-AQQLGTEEKN-KA 218 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +l ++L ++ ++Lry + +L++V+ +s++NkM+++NLA++F+P+Ll+ KIAA0013 219 TLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 268 ppdgdsad<-* +++g + KIAA0013 269 TSEG-HEK 275 //