hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14523948/chunk_1/iprscan-20080501-14523948.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0012 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01582.10.fs TIR domain 176.6 2.3e-53 1 PF01582.10.ls TIR domain 178.5 1.5e-50 1 PF00560.23.ls Leucine Rich Repeat 85.6 1.4e-22 12 PF00560.23.fs Leucine Rich Repeat 65.9 5.7e-17 12 PF01463.14.fs Leucine rich repeat C-terminal domain 24.1 1.3e-06 1 PF01463.14.ls Leucine rich repeat C-terminal domain 26.1 0.00011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/12 73 95 .. 1 24 [] 10.0 3.6 PF00560.23.ls 3/12 97 115 .. 1 24 [] 10.0 3.6 PF00560.23.ls 4/12 118 138 .. 1 24 [] 12.2 1.4 PF00560.23.ls 10/12 449 470 .. 1 24 [] 12.4 1.3 PF00560.23.ls 11/12 472 492 .. 1 24 [] 10.5 2.9 PF00560.23.ls 12/12 494 516 .. 1 24 [] 8.9 5.7 PF01463.14.fs 1/1 556 581 .. 1 26 [] 24.1 1.3e-06 PF01463.14.ls 1/1 556 581 .. 1 26 [] 26.1 0.00011 PF01582.10.fs 1/1 642 778 .. 1 150 [] 176.6 2.3e-53 PF01582.10.ls 1/1 642 778 .. 1 150 [] 178.5 1.5e-50 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 12, from 73 to 95: score 10.0, E = 3.6 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L +s+ N ++ l+ s ++ + KIAA0012 73 KLRILIISH-N-TIQ-YLDISvFkFN 95 PF00560.23.ls: domain 3 of 12, from 97 to 115: score 10.0, E = 3.6 *->nLeeLdLsgCNpsltgslpsslnl<-* +Le+LdLs+ N +l+ +++ + KIAA0012 97 ELEYLDLSH-N-KLV-KISC--HP 115 PF00560.23.ls: domain 4 of 12, from 118 to 138: score 12.2, E = 1.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++LdLs N + + lp ++ + KIAA0012 118 NLKHLDLSF-N-AF-DALPI-CkEF 138 PF00560.23.ls: domain 10 of 12, from 449 to 470: score 12.4, E = 1.3 *->nLeeLdLsgCNpsltgslpssl.nl<-* ++++LdL++ N ++ +s+p+ + +l KIAA0012 449 RIKVLDLHS-N-KI-KSIPKQVvKL 470 PF00560.23.ls: domain 11 of 12, from 472 to 492: score 10.5, E = 2.9 *->nLeeLdLsgCNpsltgslpssl.nl<-* L+eL++ N slt +lp ++++ KIAA0012 472 ALQELNVAF-N-SLT-DLPG-CgSF 492 PF00560.23.ls: domain 12 of 12, from 494 to 516: score 8.9, E = 5.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L +L +++ N s++ + +++ ++++ KIAA0012 494 SLSVLIIDH-N-SVS-HPSADfFqSC 516 PF01463.14.fs: domain 1 of 1, from 556 to 581: score 24.1, E = 1.3e-06 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ C++Pes+rG+ l+d+++s++sC KIAA0012 556 SYKCDYPESYRGTLLKDFHMSELSCN 581 PF01463.14.ls: domain 1 of 1, from 556 to 581: score 26.1, E = 0.00011 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ C++Pes+rG+ l+d+++s++sC KIAA0012 556 SYKCDYPESYRGTLLKDFHMSELSCN 581 PF01582.10.fs: domain 1 of 1, from 642 to 778: score 176.6, E = 2.3e-53 *->vFvsfsgksrsnddrdtFvshllkeLeekkqpgiklfiddrDelpGe +F+s+sg +d+ ++ ++ll++Le g++ ++++r+++pG+ KIAA0012 642 AFISYSG-----HDSFWVKNELLPNLEKE---GMQICLHERNFVPGK 680 silenlfeaIekSRiaivifSsnyasSelWCLdELveimkcaleqgnkkv si+en+ IekS ++i+++S+n+++Se WC++EL +++++ +++g + KIAA0012 681 SIVENIITCIEKSYKSIFVLSPNFVQSE-WCHYELYFAHHNLFHEGSNSL 729 ilpiFykVdpsdvrp.kqtgkFgkaflktlkwsgdktersqsdrikfWkk il+ +++++++++ +++++k ++a +++l+w+++k s+r+ fW + KIAA0012 730 ILILLEPIPQYSIPSsYHKLKSLMARRTYLEWPKEK-----SKRGLFWAN 774 alya<-* +++a KIAA0012 775 LRAA 778 PF01582.10.ls: domain 1 of 1, from 642 to 778: score 178.5, E = 1.5e-50 *->vFvsfsgksrsnddrdtFvshllkeLeekkqpgiklfiddrDelpGe +F+s+sg +d+ ++ ++ll++Le g++ ++++r+++pG+ KIAA0012 642 AFISYSG-----HDSFWVKNELLPNLEKE---GMQICLHERNFVPGK 680 silenlfeaIekSRiaivifSsnyasSelWCLdELveimkcaleqgnkkv si+en+ IekS ++i+++S+n+++Se WC++EL +++++ +++g + KIAA0012 681 SIVENIITCIEKSYKSIFVLSPNFVQSE-WCHYELYFAHHNLFHEGSNSL 729 ilpiFykVdpsdvrp.kqtgkFgkaflktlkwsgdktersqsdrikfWkk il+ +++++++++ +++++k ++a +++l+w+++k s+r+ fW + KIAA0012 730 ILILLEPIPQYSIPSsYHKLKSLMARRTYLEWPKEK-----SKRGLFWAN 774 alya<-* +++a KIAA0012 775 LRAA 778 //