hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14490968/chunk_1/iprscan-20080501-14490968.nocrc
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Query sequence: KIAA0010
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 610.4     6e-179   1
SM00015                                                  27.6     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00015    1/1      47    69 ..     1    23 []    27.6   0.0017
SM00119    1/1     745  1086 .]     1   407 []   610.4   6e-179

Alignments of top-scoring domains:
SM00015: domain 1 of 1, from 47 to 69: score 27.6, E = 0.0017
                   *->rleraAiiIQaawRGylaRkryk<-*
                      r+ ++AiiIQ+++RGy+ Rk+     
    KIAA0010    47    RRLKNAIIIQSFIRGYRDRKQQY    69   

SM00119: domain 1 of 1, from 745 to 1086: score 610.4, E = 6e-179
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                       +++ dLkkr    +++++ +n+hg +E+g+DgGG++rEF+++l+k+
    KIAA0010   745    PENEPDLKKR----IRVHL-LNAHGLDEAGIDGGGIFREFLNELLKS 786  

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   +fnp ++g+F+++++                lL+pnP+a+++ ++++a+ 
    KIAA0010   787 GFNP-NQGFFKTTNEG---------------LLYPNPAAQMLVGDSFAR- 819  

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   +++f+ r+lGkAlyen+l++l+Fa +F++kLLg++  +dv+ h+l+slDP
    KIAA0010   820 HYYFLARMLGKALYENMLVELPFAGFFLSKLLGTS--ADVDIHHLASLDP 867  

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                   e+yk+L +L                   ++++ + +el   L+F +v+++
    KIAA0010   868 EVYKNLLFL-------------------KSYEDDVEELG--LNF-TVVNN 895  

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                   d+ge++vvELk GG++ipVT++N++ Y+hlv++yrln+++++++ AFr+G
    KIAA0010   896 DLGEAQVVELKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQG 945  

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   + +V+++e+Lr +Fd++E++ Li+G +++i+++dLks+T+y ggY+++++
    KIAA0010   946 LANVVSLEWLR-MFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHP 994  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                   +i   k FW+vve Ft+ee+rkLL+FVT++sr+P  + GF++L+p     
    KIAA0010   995 VI---KVFWRVVEGFTDEEKRKLLKFVTSCSRPP--LLGFKELYP----- 1034 

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                    F+I++ gs    d +rLPtA+TC+N+LkLP+++  + Lr+KLL+AI++ 
    KIAA0010  1035 AFCIHNGGS----DLERLPTASTCMNLLKLPEFYDETLLRSKLLYAIEC- 1079 

                   RiggeGFgls<-*
                      ++GF+ls   
    KIAA0010  1080 ---AAGFELS    1086 

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